RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 LPIN2Q92539 896 aa21.83■■□□□ 1.09
COL7A1-206ENST00000466591 GNL3LQ9NVN8 582 aaKnown RBP21.83■■□□□ 1.09
COL7A1-206ENST00000466591 CEP126Q9P2H0 1117 aa21.83■■□□□ 1.09
COL7A1-206ENST00000466591 ALDH1A1P00352 501 aa21.82■■□□□ 1.08
COL7A1-206ENST00000466591 TM4SF4P48230 202 aa21.82■■□□□ 1.08
COL7A1-206ENST00000466591 ANKRD13AQ8IZ07 590 aa21.82■■□□□ 1.08
COL7A1-206ENST00000466591 LRRFIP2Q9Y608 721 aaKnown RBP21.82■■□□□ 1.08
COL7A1-206ENST00000466591 ARAP2Q8WZ64 1704 aa21.81■■□□□ 1.08
COL7A1-206ENST00000466591 IPO8O15397 1037 aaKnown RBP21.81■■□□□ 1.08
COL7A1-206ENST00000466591 ZBTB48P10074 688 aaPredicted RBP21.81■■□□□ 1.08
COL7A1-206ENST00000466591 INHBEP58166 350 aa21.81■■□□□ 1.08
COL7A1-206ENST00000466591 OTUD7BQ6GQQ9 843 aa21.81■■□□□ 1.08
COL7A1-206ENST00000466591 TRMT2AQ8IZ69 625 aaKnown RBP21.81■■□□□ 1.08
COL7A1-206ENST00000466591 VGLL2Q8N8G2 317 aa21.81■■□□□ 1.08
COL7A1-206ENST00000466591 UNCXA6NJT0 531 aa21.8■■□□□ 1.08
COL7A1-206ENST00000466591 HDLBPQ00341 1268 aaKnown RBP21.8■■□□□ 1.08
COL7A1-206ENST00000466591 MLLT1Q03111 559 aaPredicted RBP21.8■■□□□ 1.08
COL7A1-206ENST00000466591 ATP2B3Q16720 1220 aa21.8■■□□□ 1.08
COL7A1-206ENST00000466591 WDR66Q8TBY9 1149 aa21.8■■□□□ 1.08
COL7A1-206ENST00000466591 FRAT1Q92837 279 aaPredicted RBP21.8■■□□□ 1.08
COL7A1-206ENST00000466591 WNK4Q96J92 1243 aa21.8■■□□□ 1.08
COL7A1-206ENST00000466591 CLMNQ96JQ2 1002 aa21.8■■□□□ 1.08
COL7A1-206ENST00000466591 MAP3K11Q16584 847 aa21.79■■□□□ 1.08
COL7A1-206ENST00000466591 ZNF296Q8WUU4 475 aaPredicted RBP21.79■■□□□ 1.08
COL7A1-206ENST00000466591 FBXO3Q9UK99 471 aa21.79■■□□□ 1.08
COL7A1-206ENST00000466591 SUGT1Q9Y2Z0 365 aa21.79■■□□□ 1.08
COL7A1-206ENST00000466591 CSADQ9Y600 493 aa21.79■■□□□ 1.08
COL7A1-206ENST00000466591 AOX1Q06278 1338 aa21.79■■□□□ 1.08
COL7A1-206ENST00000466591 CIAO1O76071 339 aa21.78■■□□□ 1.08
COL7A1-206ENST00000466591 GNAI3P08754 354 aa21.78■■□□□ 1.08
COL7A1-206ENST00000466591 IL15P40933 162 aaPredicted RBP21.78■■□□□ 1.08
COL7A1-206ENST00000466591 RARSP54136 660 aaKnown RBP21.78■■□□□ 1.08
COL7A1-206ENST00000466591 HOOK2Q96ED9 719 aa21.78■■□□□ 1.08
COL7A1-206ENST00000466591 ELP3Q9H9T3 547 aa21.78■■□□□ 1.08
COL7A1-206ENST00000466591 SSC5DA1L4H1 1573 aa21.78■■□□□ 1.08
COL7A1-206ENST00000466591 GPR25O00155 361 aa21.77■■□□□ 1.08
COL7A1-206ENST00000466591 FKTNO75072 461 aa21.77■■□□□ 1.08
COL7A1-206ENST00000466591 USP2O75604 605 aaPredicted RBP21.77■■□□□ 1.08
COL7A1-206ENST00000466591 RFX5P48382 616 aaPredicted RBP21.77■■□□□ 1.08
COL7A1-206ENST00000466591 TMEM39BQ9GZU3 492 aa21.77■■□□□ 1.08
COL7A1-206ENST00000466591 FGFR2P21802 821 aa21.76■■□□□ 1.07
COL7A1-206ENST00000466591 CACNB3P54284 484 aa21.76■■□□□ 1.07
COL7A1-206ENST00000466591 GRIK5Q16478 980 aa21.76■■□□□ 1.07
COL7A1-206ENST00000466591 PKN2Q16513 984 aaKnown RBP21.76■■□□□ 1.07
COL7A1-206ENST00000466591 MEIS3Q99687 375 aa21.76■■□□□ 1.07
COL7A1-206ENST00000466591 IFNL1Q8IU54 200 aa21.75■■□□□ 1.07
COL7A1-206ENST00000466591 ARHGAP45Q92619 1136 aa21.75■■□□□ 1.07
COL7A1-206ENST00000466591 OPTNQ96CV9 577 aa21.75■■□□□ 1.07
COL7A1-206ENST00000466591 ZDHHC15Q96MV8 337 aa21.75■■□□□ 1.07
COL7A1-206ENST00000466591 SRGAP3O43295 1099 aa21.74■■□□□ 1.07
COL7A1-206ENST00000466591 ATG9AQ7Z3C6 839 aa21.74■■□□□ 1.07
COL7A1-206ENST00000466591 PA2G4Q9UQ80 394 aaKnown RBP21.74■■□□□ 1.07
COL7A1-206ENST00000466591 MYH13Q9UKX3 1938 aa21.73■■□□□ 1.07
COL7A1-206ENST00000466591 WDHD1O75717 1129 aaPredicted RBP21.73■■□□□ 1.07
COL7A1-206ENST00000466591 LDHBP07195 334 aaKnown RBP21.73■■□□□ 1.07
COL7A1-206ENST00000466591 MAP3K9P80192 1104 aa21.73■■□□□ 1.07
COL7A1-206ENST00000466591 HNRNPUQ00839 825 aaKnown RBP eCLIP21.73■■□□□ 1.07
COL7A1-206ENST00000466591 DENND2AQ9ULE3 1009 aa21.73■■□□□ 1.07
COL7A1-206ENST00000466591 SOX10P56693 466 aa21.72■■□□□ 1.07
COL7A1-206ENST00000466591 DCAF15Q66K64 600 aa21.72■■□□□ 1.07
COL7A1-206ENST00000466591 HHIPL2Q6UWX4 724 aa21.72■■□□□ 1.07
COL7A1-206ENST00000466591 ZGPATQ8N5A5 531 aaKnown RBP21.72■■□□□ 1.07
COL7A1-206ENST00000466591 MRIQ9BWK5 157 aa21.72■■□□□ 1.07
COL7A1-206ENST00000466591 AKAP2Q9Y2D5 859 aa21.72■■□□□ 1.07
COL7A1-206ENST00000466591 NOM1Q5C9Z4 860 aaKnown RBP21.71■■□□□ 1.07
COL7A1-206ENST00000466591 GORABQ5T7V8 394 aa21.71■■□□□ 1.07
COL7A1-206ENST00000466591 INTS3Q68E01 1043 aaKnown RBP21.71■■□□□ 1.07
COL7A1-206ENST00000466591 CLUAP1Q96AJ1 413 aa21.71■■□□□ 1.07
COL7A1-206ENST00000466591 WRNIP1Q96S55 665 aa21.71■■□□□ 1.07
COL7A1-206ENST00000466591 SEMA3EO15041 775 aa21.7■■□□□ 1.06
COL7A1-206ENST00000466591 VGLL4Q14135 290 aa21.7■■□□□ 1.06
COL7A1-206ENST00000466591 ATF7IPQ6VMQ6 1270 aa21.7■■□□□ 1.06
COL7A1-206ENST00000466591 FAM83AQ86UY5 434 aa21.7■■□□□ 1.06
COL7A1-206ENST00000466591 DZIP1Q86YF9 867 aaKnown RBP21.7■■□□□ 1.06
COL7A1-206ENST00000466591 CDAN1Q8IWY9 1227 aa21.7■■□□□ 1.06
COL7A1-206ENST00000466591 OTUD5Q96G74 571 aa21.7■■□□□ 1.06
COL7A1-206ENST00000466591 TEPSINQ96N21 525 aa21.7■■□□□ 1.06
COL7A1-206ENST00000466591 COPRSQ9NQ92 184 aa21.7■■□□□ 1.06
COL7A1-206ENST00000466591 HPS5Q9UPZ3 1129 aa21.7■■□□□ 1.06
COL7A1-206ENST00000466591 GNAI2P04899 355 aa21.69■■□□□ 1.06
COL7A1-206ENST00000466591 GTF2A2P52657 109 aa21.69■■□□□ 1.06
COL7A1-206ENST00000466591 TCP10Q12799 353 aa21.69■■□□□ 1.06
COL7A1-206ENST00000466591 FKBP1CQ5VVH2 108 aa21.69■■□□□ 1.06
COL7A1-206ENST00000466591 APOBEC3HQ6NTF7 200 aaKnown RBP21.69■■□□□ 1.06
COL7A1-206ENST00000466591 NEUROD6Q96NK8 337 aa21.69■■□□□ 1.06
COL7A1-206ENST00000466591 CFHR5Q9BXR6 569 aa21.69■■□□□ 1.06
COL7A1-206ENST00000466591 CCL15-CCL14A0A0B4J2E2 113 aa21.68■■□□□ 1.06
COL7A1-206ENST00000466591 IGF2BP3O00425 579 aaKnown RBP eCLIP21.68■■□□□ 1.06
COL7A1-206ENST00000466591 PRDX5P30044 214 aa21.68■■□□□ 1.06
COL7A1-206ENST00000466591 PHKA1P46020 1223 aa21.68■■□□□ 1.06
COL7A1-206ENST00000466591 MVPQ14764 893 aaKnown RBP21.68■■□□□ 1.06
COL7A1-206ENST00000466591 DIXDC1Q155Q3 683 aa21.68■■□□□ 1.06
COL7A1-206ENST00000466591 CCL15Q16663 113 aa21.68■■□□□ 1.06
COL7A1-206ENST00000466591 SLF2Q8IX21 1173 aa21.68■■□□□ 1.06
COL7A1-206ENST00000466591 FTSJ3Q8IY81 847 aaKnown RBP21.68■■□□□ 1.06
COL7A1-206ENST00000466591 ERO1AQ96HE7 468 aa21.68■■□□□ 1.06
COL7A1-206ENST00000466591 ABCF2Q9UG63 623 aa21.68■■□□□ 1.06
COL7A1-206ENST00000466591 TRIM17Q9Y577 477 aa21.68■■□□□ 1.06
COL7A1-206ENST00000466591 BCAR3O75815 825 aa21.67■■□□□ 1.06
COL7A1-206ENST00000466591 TRIM27P14373 513 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms