RNA–Protein interactions for RNA: ENST00000466288.1

CXCR4-203, Transcript of C-X-C motif chemokine receptor 4, humanhuman

TSL 1 (best)

Gene CXCR4, Length 1,485 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-203ENST00000466288 FOXO4P98177 505 aa18.46■□□□□ 0.54
CXCR4-203ENST00000466288 IFIT5Q13325 482 aaKnown RBP18.46■□□□□ 0.54
CXCR4-203ENST00000466288 TMEM39BQ9GZU3 492 aa18.46■□□□□ 0.54
CXCR4-203ENST00000466288 OTOFQ9HC10 1997 aa18.45■□□□□ 0.54
CXCR4-203ENST00000466288 FLIIQ13045 1269 aa18.45■□□□□ 0.54
CXCR4-203ENST00000466288 DDX10Q13206 875 aaKnown RBP18.45■□□□□ 0.54
CXCR4-203ENST00000466288 DZIP1LQ8IYY4 767 aaKnown RBP18.45■□□□□ 0.54
CXCR4-203ENST00000466288 LINS1Q8NG48 757 aa18.45■□□□□ 0.54
CXCR4-203ENST00000466288 RBM27Q9P2N5 1060 aaKnown RBP18.45■□□□□ 0.54
CXCR4-203ENST00000466288 TTF2Q9UNY4 1162 aaKnown RBP18.45■□□□□ 0.54
CXCR4-203ENST00000466288 CSADQ9Y600 493 aa18.45■□□□□ 0.54
CXCR4-203ENST00000466288 SPDYE5A6NIY4 337 aa18.44■□□□□ 0.54
CXCR4-203ENST00000466288 TCP10L2B9ZVM9 353 aa18.44■□□□□ 0.54
CXCR4-203ENST00000466288 TWISTNBQ3B726 338 aaPredicted RBP18.44■□□□□ 0.54
CXCR4-203ENST00000466288 MFSD14BQ5SR56 506 aa18.44■□□□□ 0.54
CXCR4-203ENST00000466288 TDRD7Q8NHU6 1098 aaKnown RBP18.44■□□□□ 0.54
CXCR4-203ENST00000466288 DNAAF4Q8WXU2 420 aa18.44■□□□□ 0.54
CXCR4-203ENST00000466288 SHISA4Q96DD7 197 aa18.44■□□□□ 0.54
CXCR4-203ENST00000466288 BTBD19C9JJ37 291 aa18.43■□□□□ 0.54
CXCR4-203ENST00000466288 GNRH1P01148 92 aa18.43■□□□□ 0.54
CXCR4-203ENST00000466288 ZCCHC17Q9NP64 241 aaKnown RBP18.43■□□□□ 0.54
CXCR4-203ENST00000466288 KIF22Q14807 665 aa18.42■□□□□ 0.54
CXCR4-203ENST00000466288 MTFR1Q15390 333 aa18.42■□□□□ 0.54
CXCR4-203ENST00000466288 SNCAIPQ9Y6H5 919 aa18.42■□□□□ 0.54
CXCR4-203ENST00000466288 PLIN1O60240 522 aa18.41■□□□□ 0.54
CXCR4-203ENST00000466288 WDHD1O75717 1129 aaPredicted RBP18.41■□□□□ 0.54
CXCR4-203ENST00000466288 CETPP11597 493 aa18.41■□□□□ 0.54
CXCR4-203ENST00000466288 CRKP46108 304 aa18.41■□□□□ 0.54
CXCR4-203ENST00000466288 TNNI2P48788 182 aa18.41■□□□□ 0.54
CXCR4-203ENST00000466288 PRMT2P55345 433 aa18.41■□□□□ 0.54
CXCR4-203ENST00000466288 FKBP5Q13451 457 aaPredicted RBP18.41■□□□□ 0.54
CXCR4-203ENST00000466288 ZNF594Q96JF6 807 aaPredicted RBP18.41■□□□□ 0.54
CXCR4-203ENST00000466288 PRO3102Q9H379 93 aa18.41■□□□□ 0.54
CXCR4-203ENST00000466288 CHMP3Q9Y3E7 222 aa18.41■□□□□ 0.54
CXCR4-203ENST00000466288 IRF6O14896 467 aa18.4■□□□□ 0.54
CXCR4-203ENST00000466288 CTGFP29279 349 aa18.4■□□□□ 0.54
CXCR4-203ENST00000466288 LMBR1LQ6UX01 489 aa18.4■□□□□ 0.54
CXCR4-203ENST00000466288 LDHAL6AQ6ZMR3 332 aa18.4■□□□□ 0.54
CXCR4-203ENST00000466288 UBE2Q1Q7Z7E8 422 aa18.4■□□□□ 0.54
CXCR4-203ENST00000466288 DPF3Q92784 378 aa18.4■□□□□ 0.54
CXCR4-203ENST00000466288 HIBADHP31937 336 aaKnown RBP18.39■□□□□ 0.54
CXCR4-203ENST00000466288 GYG1P46976 350 aa18.39■□□□□ 0.54
CXCR4-203ENST00000466288 EPHA10Q5JZY3 1008 aa18.39■□□□□ 0.54
CXCR4-203ENST00000466288 C17orf99Q6UX52 265 aa18.39■□□□□ 0.54
CXCR4-203ENST00000466288 ERO1BQ86YB8 467 aa18.39■□□□□ 0.54
CXCR4-203ENST00000466288 FAM84BQ96KN1 310 aaPredicted RBP18.39■□□□□ 0.54
CXCR4-203ENST00000466288 A0A1B0GUL6 1792 aa18.39■□□□□ 0.53
CXCR4-203ENST00000466288 ZSWIM8A7E2V4 1837 aa18.39■□□□□ 0.53
CXCR4-203ENST00000466288 SNAPC2Q13487 334 aa18.39■□□□□ 0.53
CXCR4-203ENST00000466288 UBE4AQ14139 1066 aa18.39■□□□□ 0.53
CXCR4-203ENST00000466288 GRIK5Q16478 980 aa18.39■□□□□ 0.53
CXCR4-203ENST00000466288 ZKSCAN4Q969J2 545 aaPredicted RBP18.39■□□□□ 0.53
CXCR4-203ENST00000466288 CNNM1Q9NRU3 951 aa18.39■□□□□ 0.53
CXCR4-203ENST00000466288 CCDC57Q2TAC2 916 aa18.38■□□□□ 0.53
CXCR4-203ENST00000466288 WRNIP1Q96S55 665 aa18.38■□□□□ 0.53
CXCR4-203ENST00000466288 PRKRIP1Q9H875 184 aaPredicted RBP18.38■□□□□ 0.53
CXCR4-203ENST00000466288 SRRDQ9UH36 339 aa18.38■□□□□ 0.53
CXCR4-203ENST00000466288 ECM2O94769 699 aaPredicted RBP18.37■□□□□ 0.53
CXCR4-203ENST00000466288 GJA8P48165 433 aa18.37■□□□□ 0.53
CXCR4-203ENST00000466288 CACNB3P54284 484 aa18.37■□□□□ 0.53
CXCR4-203ENST00000466288 PPIL2Q13356 520 aa18.37■□□□□ 0.53
CXCR4-203ENST00000466288 BEND3Q5T5X7 828 aa18.37■□□□□ 0.53
CXCR4-203ENST00000466288 TRIM47Q96LD4 638 aa18.37■□□□□ 0.53
CXCR4-203ENST00000466288 DLL1O00548 723 aa18.36■□□□□ 0.53
CXCR4-203ENST00000466288 PSMC4P43686 418 aa18.36■□□□□ 0.53
CXCR4-203ENST00000466288 TAF7LQ5H9L4 462 aa18.36■□□□□ 0.53
CXCR4-203ENST00000466288 NKX2-3Q8TAU0 364 aa18.36■□□□□ 0.53
CXCR4-203ENST00000466288 CPA4Q9UI42 421 aa18.36■□□□□ 0.53
CXCR4-203ENST00000466288 ARAP2Q8WZ64 1704 aa18.36■□□□□ 0.53
CXCR4-203ENST00000466288 GJB1P08034 283 aa18.35■□□□□ 0.53
CXCR4-203ENST00000466288 OSBPP22059 807 aa18.35■□□□□ 0.53
CXCR4-203ENST00000466288 GRK4P32298 578 aa18.35■□□□□ 0.53
CXCR4-203ENST00000466288 HDLBPQ00341 1268 aaKnown RBP18.35■□□□□ 0.53
CXCR4-203ENST00000466288 CCDC27Q2M243 656 aa18.35■□□□□ 0.53
CXCR4-203ENST00000466288 RIPOR2Q9Y4F9 1068 aa18.35■□□□□ 0.53
CXCR4-203ENST00000466288 F6X3S4 739 aa18.34■□□□□ 0.53
CXCR4-203ENST00000466288 FAM83AQ86UY5 434 aa18.34■□□□□ 0.53
CXCR4-203ENST00000466288 WWC1Q8IX03 1113 aa18.34■□□□□ 0.53
CXCR4-203ENST00000466288 SLC17A8Q8NDX2 589 aa18.34■□□□□ 0.53
CXCR4-203ENST00000466288 HTATIP2Q9BUP3 242 aa18.34■□□□□ 0.53
CXCR4-203ENST00000466288 ADGRA2Q96PE1 1338 aa18.34■□□□□ 0.53
CXCR4-203ENST00000466288 CCL5P13501 91 aa18.33■□□□□ 0.53
CXCR4-203ENST00000466288 PPATQ06203 517 aa18.33■□□□□ 0.53
CXCR4-203ENST00000466288 FBXO33Q7Z6M2 555 aa18.33■□□□□ 0.53
CXCR4-203ENST00000466288 ANKRD23Q86SG2 305 aa18.33■□□□□ 0.53
CXCR4-203ENST00000466288 RAET1EQ8TD07 263 aa18.33■□□□□ 0.53
CXCR4-203ENST00000466288 GRM8O00222 908 aa18.33■□□□□ 0.52
CXCR4-203ENST00000466288 HOXD10P28358 340 aa18.33■□□□□ 0.52
CXCR4-203ENST00000466288 FKBP1CQ5VVH2 108 aa18.33■□□□□ 0.52
CXCR4-203ENST00000466288 APOBEC3HQ6NTF7 200 aaKnown RBP18.33■□□□□ 0.52
CXCR4-203ENST00000466288 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.33■□□□□ 0.52
CXCR4-203ENST00000466288 TEKT1Q969V4 418 aa18.33■□□□□ 0.52
CXCR4-203ENST00000466288 ZDHHC15Q96MV8 337 aa18.33■□□□□ 0.52
CXCR4-203ENST00000466288 PUS3Q9BZE2 481 aaKnown RBP18.33■□□□□ 0.52
CXCR4-203ENST00000466288 PDHXO00330 501 aa18.32■□□□□ 0.52
CXCR4-203ENST00000466288 ZBTB7BO15156 539 aaPredicted RBP18.32■□□□□ 0.52
CXCR4-203ENST00000466288 FMNL1O95466 1100 aaPredicted RBP18.32■□□□□ 0.52
CXCR4-203ENST00000466288 HOOK2Q96ED9 719 aa18.32■□□□□ 0.52
CXCR4-203ENST00000466288 MRIQ9BWK5 157 aa18.32■□□□□ 0.52
CXCR4-203ENST00000466288 RNF208Q9H0X6 261 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms