RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 PDE8AO60658 829 aa12.52□□□□□ -0.41
USP39-212ENST00000465514 WDHD1O75717 1129 aaPredicted RBP12.52□□□□□ -0.41
USP39-212ENST00000465514 SPDYE6P0CI01 402 aa12.52□□□□□ -0.41
USP39-212ENST00000465514 CALD1Q05682 793 aaKnown RBP12.52□□□□□ -0.41
USP39-212ENST00000465514 VGLL4Q14135 290 aa12.52□□□□□ -0.41
USP39-212ENST00000465514 RASA3Q14644 834 aa12.52□□□□□ -0.41
USP39-212ENST00000465514 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.52□□□□□ -0.41
USP39-212ENST00000465514 CERS5Q8N5B7 392 aa12.52□□□□□ -0.41
USP39-212ENST00000465514 C8orf58Q8NAV2 365 aa12.52□□□□□ -0.41
USP39-212ENST00000465514 TRIM47Q96LD4 638 aa12.52□□□□□ -0.41
USP39-212ENST00000465514 MYD88Q99836 296 aa12.52□□□□□ -0.41
USP39-212ENST00000465514 GDF15Q99988 308 aa12.52□□□□□ -0.41
USP39-212ENST00000465514 BIN2Q9UBW5 565 aaPredicted RBP12.52□□□□□ -0.41
USP39-212ENST00000465514 SRRDQ9UH36 339 aa12.52□□□□□ -0.41
USP39-212ENST00000465514 OSBPP22059 807 aa12.51□□□□□ -0.41
USP39-212ENST00000465514 BMP8BP34820 402 aa12.51□□□□□ -0.41
USP39-212ENST00000465514 PSMC4P43686 418 aa12.51□□□□□ -0.41
USP39-212ENST00000465514 CFAP100Q494V2 611 aa12.51□□□□□ -0.41
USP39-212ENST00000465514 CDC5LQ99459 802 aaKnown RBP12.51□□□□□ -0.41
USP39-212ENST00000465514 UNC93B1Q9H1C4 597 aa12.51□□□□□ -0.41
USP39-212ENST00000465514 MYPNQ86TC9 1320 aa12.51□□□□□ -0.41
USP39-212ENST00000465514 BTBD19C9JJ37 291 aa12.5□□□□□ -0.41
USP39-212ENST00000465514 F8W031 263 aaPredicted RBP12.5□□□□□ -0.41
USP39-212ENST00000465514 PCCAP05165 728 aaPredicted RBP12.5□□□□□ -0.41
USP39-212ENST00000465514 BCAMP50895 628 aa12.5□□□□□ -0.41
USP39-212ENST00000465514 LRIT3Q3SXY7 679 aa12.5□□□□□ -0.41
USP39-212ENST00000465514 CDAN1Q8IWY9 1227 aa12.5□□□□□ -0.41
USP39-212ENST00000465514 CCDC191Q8NCU4 936 aa12.5□□□□□ -0.41
USP39-212ENST00000465514 PRMT6Q96LA8 375 aaPredicted RBP12.5□□□□□ -0.41
USP39-212ENST00000465514 FOXD4L1Q9NU39 408 aa12.5□□□□□ -0.41
USP39-212ENST00000465514 BSDC1Q9NW68 430 aaPredicted RBP12.5□□□□□ -0.41
USP39-212ENST00000465514 CDH23Q9H251 3354 aa12.5□□□□□ -0.41
USP39-212ENST00000465514 RPTORQ8N122 1335 aa12.49□□□□□ -0.41
USP39-212ENST00000465514 SGPL1O95470 568 aa12.49□□□□□ -0.41
USP39-212ENST00000465514 CETPP11597 493 aa12.49□□□□□ -0.41
USP39-212ENST00000465514 CTSWP56202 376 aa12.49□□□□□ -0.41
USP39-212ENST00000465514 UBXN2AP68543 259 aa12.49□□□□□ -0.41
USP39-212ENST00000465514 METTL22Q9BUU2 404 aaPredicted RBP12.49□□□□□ -0.41
USP39-212ENST00000465514 ZCCHC17Q9NP64 241 aaKnown RBP12.49□□□□□ -0.41
USP39-212ENST00000465514 CWC25Q9NXE8 425 aaPredicted RBP12.49□□□□□ -0.41
USP39-212ENST00000465514 CPA4Q9UI42 421 aa12.49□□□□□ -0.41
USP39-212ENST00000465514 CSADQ9Y600 493 aa12.49□□□□□ -0.41
USP39-212ENST00000465514 FMNL1O95466 1100 aaPredicted RBP12.48□□□□□ -0.41
USP39-212ENST00000465514 DDX58O95786 925 aaKnown RBP12.48□□□□□ -0.41
USP39-212ENST00000465514 HOXD10P28358 340 aa12.48□□□□□ -0.41
USP39-212ENST00000465514 CCDC30Q5VVM6 783 aa12.48□□□□□ -0.41
USP39-212ENST00000465514 C17orf99Q6UX52 265 aa12.48□□□□□ -0.41
USP39-212ENST00000465514 C7orf61Q8IZ16 206 aa12.48□□□□□ -0.41
USP39-212ENST00000465514 TSPYL6Q8N831 410 aa12.48□□□□□ -0.41
USP39-212ENST00000465514 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.48□□□□□ -0.413e-6■□□□□ 9.8
USP39-212ENST00000465514 CHMP4AQ9BY43 222 aa12.48□□□□□ -0.41
USP39-212ENST00000465514 ZMYND8Q9ULU4 1186 aaPredicted RBP12.48□□□□□ -0.41
USP39-212ENST00000465514 LEMD3Q9Y2U8 911 aa12.48□□□□□ -0.41
USP39-212ENST00000465514 DDX60LQ5H9U9 1706 aaKnown RBP12.48□□□□□ -0.41
USP39-212ENST00000465514 SPDYE5A6NIY4 337 aa12.47□□□□□ -0.41
USP39-212ENST00000465514 MAP3K9P80192 1104 aa12.47□□□□□ -0.41
USP39-212ENST00000465514 PRKCZQ05513 592 aa12.47□□□□□ -0.41
USP39-212ENST00000465514 TDHQ8IZJ6 230 aa12.47□□□□□ -0.41
USP39-212ENST00000465514 HELBQ8NG08 1087 aaPredicted RBP12.47□□□□□ -0.41
USP39-212ENST00000465514 TEPSINQ96N21 525 aa12.47□□□□□ -0.41
USP39-212ENST00000465514 GREM2Q9H772 168 aa12.47□□□□□ -0.41
USP39-212ENST00000465514 MAP3K2Q9Y2U5 619 aa12.47□□□□□ -0.41
USP39-212ENST00000465514 ADGRA2Q96PE1 1338 aa12.46□□□□□ -0.41
USP39-212ENST00000465514 DOCK3Q8IZD9 2030 aa12.46□□□□□ -0.41
USP39-212ENST00000465514 TFRCP02786 760 aaKnown RBP12.46□□□□□ -0.41
USP39-212ENST00000465514 RBM5P52756 815 aaKnown RBP eCLIP12.46□□□□□ -0.41
USP39-212ENST00000465514 SNAPC2Q13487 334 aa12.46□□□□□ -0.41
USP39-212ENST00000465514 TNFAIP1Q13829 316 aa12.46□□□□□ -0.41
USP39-212ENST00000465514 KSR2Q6VAB6 950 aa12.46□□□□□ -0.41
USP39-212ENST00000465514 SLAIN1Q8ND83 568 aa12.46□□□□□ -0.41
USP39-212ENST00000465514 DIS3LQ8TF46 1054 aaKnown RBP12.46□□□□□ -0.41
USP39-212ENST00000465514 TSR2Q969E8 191 aaKnown RBP12.46□□□□□ -0.41
USP39-212ENST00000465514 PAWRQ96IZ0 340 aaKnown RBP12.46□□□□□ -0.41
USP39-212ENST00000465514 GUCD1Q96NT3 240 aa12.46□□□□□ -0.41
USP39-212ENST00000465514 CD209Q9NNX6 404 aa12.46□□□□□ -0.41
USP39-212ENST00000465514 SNCAIPQ9Y6H5 919 aa12.46□□□□□ -0.41
USP39-212ENST00000465514 PI4KAP2A4QPH2 592 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 IRF6O14896 467 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 IGKV5-2P06315 115 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 SYN1P17600 705 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 COL9A1P20849 921 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 MAGEA10P43363 369 aaPredicted RBP12.45□□□□□ -0.42
USP39-212ENST00000465514 SPDYE2Q495Y8 402 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 CCDC184Q52MB2 194 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 PI4KAP1Q8N8J0 262 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 TTLL11Q8NHH1 800 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 DEFB118Q96PH6 123 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 TMEM39BQ9GZU3 492 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 ZNF70Q9UC06 446 aaPredicted RBP12.45□□□□□ -0.42
USP39-212ENST00000465514 JAG2Q9Y219 1238 aa12.45□□□□□ -0.42
USP39-212ENST00000465514 IRS2Q9Y4H2 1338 aa12.44□□□□□ -0.42
USP39-212ENST00000465514 INHAP05111 366 aa12.44□□□□□ -0.42
USP39-212ENST00000465514 ELNP15502 786 aa12.44□□□□□ -0.42
USP39-212ENST00000465514 KCNJ4P48050 445 aa12.44□□□□□ -0.42
USP39-212ENST00000465514 ERO1BQ86YB8 467 aa12.44□□□□□ -0.42
USP39-212ENST00000465514 STK31Q9BXU1 1019 aa12.44□□□□□ -0.42
USP39-212ENST00000465514 GABRQQ9UN88 632 aa12.44□□□□□ -0.42
USP39-212ENST00000465514 TCP10L2B9ZVM9 353 aa12.43□□□□□ -0.42
USP39-212ENST00000465514 ADCY3O60266 1144 aa12.43□□□□□ -0.42
USP39-212ENST00000465514 IGHMBP2P38935 993 aaKnown RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms