RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 UPF3BQ9BZI7 483 aaKnown RBP3.64□□□□□ -1.83
USP40-211ENST00000464956 ZC3H12CQ9C0D7 883 aaKnown RBP3.64□□□□□ -1.83
USP40-211ENST00000464956 ATP11BQ9Y2G3 1177 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 EMILIN1Q9Y6C2 1016 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 COL1A1P02452 1464 aaPredicted RBP3.64□□□□□ -1.83
USP40-211ENST00000464956 AOX1Q06278 1338 aa3.64□□□□□ -1.83
USP40-211ENST00000464956 USP17L3A6NCW0 530 aa3.63□□□□□ -1.83
USP40-211ENST00000464956 USP17L4A6NCW7 530 aa3.63□□□□□ -1.83
USP40-211ENST00000464956 PDHXO00330 501 aa3.63□□□□□ -1.83
USP40-211ENST00000464956 USP2O75604 605 aaPredicted RBP3.63□□□□□ -1.83
USP40-211ENST00000464956 PBX2P40425 430 aa3.63□□□□□ -1.83
USP40-211ENST00000464956 GRAPQ13588 217 aa3.63□□□□□ -1.83
USP40-211ENST00000464956 CCDC174Q6PII3 467 aa3.63□□□□□ -1.83
USP40-211ENST00000464956 DDX46Q7L014 1031 aaKnown RBP3.63□□□□□ -1.83
USP40-211ENST00000464956 USP17L1Q7RTZ2 530 aa3.63□□□□□ -1.83
USP40-211ENST00000464956 BMP8AQ7Z5Y6 402 aa3.63□□□□□ -1.83
USP40-211ENST00000464956 ANKRD23Q86SG2 305 aa3.63□□□□□ -1.83
USP40-211ENST00000464956 GRAPLQ8TC17 118 aaPredicted RBP3.63□□□□□ -1.83
USP40-211ENST00000464956 IBTKQ9P2D0 1353 aaPredicted RBP3.63□□□□□ -1.83
USP40-211ENST00000464956 HEG1Q9ULI3 1381 aa3.63□□□□□ -1.83
USP40-211ENST00000464956 ZDBF2Q9HCK1 2354 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 ATRXP46100 2492 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 RGPD2P0DJD1 1756 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 SPDYE5A6NIY4 337 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 H0Y858 1186 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 FYB1O15117 783 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 MYO1BO43795 1136 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 KDM4AO75164 1064 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 NBL1P41271 181 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 MAP3K9P80192 1104 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 FPGSQ05932 587 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 VGLL4Q14135 290 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 PUS10Q3MIT2 529 aaKnown RBP3.62□□□□□ -1.83
USP40-211ENST00000464956 EPHA10Q5JZY3 1008 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 C3orf67Q6ZVT6 689 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 PPP1R42Q7Z4L9 355 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 FMNL2Q96PY5 1086 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 NKX2-4Q9H2Z4 354 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 TLR9Q9NR96 1032 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 POLLQ9UGP5 575 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 MTCH2Q9Y6C9 303 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 ZFHX4Q86UP3 3567 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 GAKO14976 1311 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 MYO3BQ8WXR4 1341 aa3.62□□□□□ -1.83
USP40-211ENST00000464956 MYBBP1AQ9BQG0 1328 aaKnown RBP3.62□□□□□ -1.83
USP40-211ENST00000464956 UNC79Q9P2D8 2635 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 IRF6O14896 467 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 RNMTO43148 476 aaKnown RBP3.61□□□□□ -1.83
USP40-211ENST00000464956 BCRP11274 1271 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 PRKAR2AP13861 404 aaKnown RBP3.61□□□□□ -1.83
USP40-211ENST00000464956 RAG1P15918 1043 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 POU3F3P20264 500 aaPredicted RBP3.61□□□□□ -1.83
USP40-211ENST00000464956 NUBP1P53384 320 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 EPHB4P54760 987 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 EIF4A2Q14240 407 aaKnown RBP3.61□□□□□ -1.83
USP40-211ENST00000464956 HLFQ16534 295 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 LEXMQ3ZCV2 418 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 NBPF12Q5TAG4 269 aaPredicted RBP3.61□□□□□ -1.83
USP40-211ENST00000464956 KIAA0319Q5VV43 1072 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 PPP2R2DQ66LE6 453 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.61□□□□□ -1.83
USP40-211ENST00000464956 ERO1BQ86YB8 467 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 FBXL6Q8N531 539 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 MTIF3Q9H2K0 278 aaKnown RBP3.61□□□□□ -1.83
USP40-211ENST00000464956 LGR6Q9HBX8 967 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 PDLIM7Q9NR12 457 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 DLL3Q9NYJ7 618 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 FAM50BQ9Y247 325 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 TACC3Q9Y6A5 838 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 ZNF804BA4D1E1 1349 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 LAMB2P55268 1798 aa3.61□□□□□ -1.83
USP40-211ENST00000464956 TRIM43BA6NCK2 446 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 TMEM221A6NGB7 291 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 GRXCR1A8MXD5 290 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 ERVV-1B6SEH8 477 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 M0R296 226 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 DNM1LO00429 736 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 SLC24A1O60721 1099 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 SDHBP21912 280 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 GPTP24298 496 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 PIP4K2AP48426 406 aaPredicted RBP3.6□□□□□ -1.83
USP40-211ENST00000464956 GPSM2P81274 684 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 TRIM32Q13049 653 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 TNFAIP1Q13829 316 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 DLGAP5Q15398 846 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 TRIM60Q495X7 471 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 SUSD4Q5VX71 490 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 PTCRAQ6ISU1 281 aaPredicted RBP3.6□□□□□ -1.83
USP40-211ENST00000464956 ZNF790Q6PG37 636 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 KIAA2013Q8IYS2 634 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.6□□□□□ -1.83
USP40-211ENST00000464956 TBC1D16Q8TBP0 767 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 EDAQ92838 391 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 FBXW7Q969H0 707 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 TRIM43Q96BQ3 446 aaPredicted RBP3.6□□□□□ -1.83
USP40-211ENST00000464956 PUS7Q96PZ0 661 aaKnown RBP3.6□□□□□ -1.83
USP40-211ENST00000464956 PRKAG3Q9UGI9 489 aa3.6□□□□□ -1.83
USP40-211ENST00000464956 GALR2O43603 387 aaPredicted RBP3.59□□□□□ -1.83
USP40-211ENST00000464956 UFL1O94874 794 aa3.59□□□□□ -1.83
USP40-211ENST00000464956 NTSR2O95665 410 aa3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms