RNA–Protein interactions for RNA: ENST00000460170.2

PTPRU-205, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,337 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-205ENST00000460170 ZNF804AQ7Z570 1209 aa16.8■□□□□ 0.28
PTPRU-205ENST00000460170 ZNF219Q9P2Y4 722 aaPredicted RBP16.8■□□□□ 0.28
PTPRU-205ENST00000460170 CDC42BPAQ5VT25 1732 aa16.8■□□□□ 0.28
PTPRU-205ENST00000460170 POTEJP0CG39 1038 aa16.8■□□□□ 0.28
PTPRU-205ENST00000460170 C6orf50Q9HD87 102 aa16.8■□□□□ 0.28
PTPRU-205ENST00000460170 TRPM1Q7Z4N2 1603 aa16.8■□□□□ 0.28
PTPRU-205ENST00000460170 A0A0D9SFI3 127 aa16.8■□□□□ 0.28
PTPRU-205ENST00000460170 PHF23Q9BUL5 403 aaPredicted RBP16.8■□□□□ 0.28
PTPRU-205ENST00000460170 ARFGAP3Q9NP61 516 aa16.8■□□□□ 0.28
PTPRU-205ENST00000460170 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.8■□□□□ 0.28
PTPRU-205ENST00000460170 V9GYY5 206 aaPredicted RBP16.8■□□□□ 0.28
PTPRU-205ENST00000460170 CETN1Q12798 172 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 ZSWIM6Q9HCJ5 1215 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 RBM28Q9NW13 759 aaKnown RBP16.79■□□□□ 0.28
PTPRU-205ENST00000460170 SEPT7Q16181 437 aaKnown RBP16.79■□□□□ 0.28
PTPRU-205ENST00000460170 ANKRD2Q9GZV1 360 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 DEXIO95424 95 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 CETN2P41208 172 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 SSR1P43307 286 aaKnown RBP16.79■□□□□ 0.28
PTPRU-205ENST00000460170 SIRT2Q8IXJ6 389 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 SHTN1A0MZ66 631 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 CTAGE15A4D2H0 777 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 CTAGE8P0CG41 777 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 CTAGE6Q86UF2 777 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 CTAGE4Q8IX94 777 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 GTF3C6Q969F1 213 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 ARMT1Q9H993 441 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 TET3O43151 1660 aa16.79■□□□□ 0.28
PTPRU-205ENST00000460170 DNAJC10Q8IXB1 793 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 DENND2AQ9ULE3 1009 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 MCM7P33993 719 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 STXBP4Q6ZWJ1 553 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 CALCOCO1Q9P1Z2 691 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 ZCCHC11Q5TAX3 1644 aaKnown RBP16.78■□□□□ 0.28
PTPRU-205ENST00000460170 E7EWF7 191 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 PHKG2P15735 406 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 ZAP70P43403 619 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 ERMNQ8TAM6 284 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 ANTXR1Q9H6X2 564 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 ADCY10Q96PN6 1610 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 ZNF75DP51815 510 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 LPIN2Q92539 896 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 KCNH3Q9ULD8 1083 aa16.78■□□□□ 0.28
PTPRU-205ENST00000460170 NOP2P46087 812 aaKnown RBP16.77■□□□□ 0.28
PTPRU-205ENST00000460170 SYT10Q6XYQ8 523 aa16.77■□□□□ 0.28
PTPRU-205ENST00000460170 RGS12O14924 1447 aa16.77■□□□□ 0.28
PTPRU-205ENST00000460170 TMCO5BA8MYB1 307 aa16.77■□□□□ 0.28
PTPRU-205ENST00000460170 MYO1BO43795 1136 aa16.77■□□□□ 0.28
PTPRU-205ENST00000460170 CD2BP2O95400 341 aaKnown RBP16.77■□□□□ 0.28
PTPRU-205ENST00000460170 PLEKHG1Q9ULL1 1385 aa16.77■□□□□ 0.28
PTPRU-205ENST00000460170 PLCG2P16885 1265 aa16.77■□□□□ 0.28
PTPRU-205ENST00000460170 USP6P35125 1406 aa16.77■□□□□ 0.28
PTPRU-205ENST00000460170 CKAP4Q07065 602 aaKnown RBP16.77■□□□□ 0.28
PTPRU-205ENST00000460170 DTHD1Q6ZMT9 781 aa16.77■□□□□ 0.28
PTPRU-205ENST00000460170 MTMR6Q9Y217 621 aa16.77■□□□□ 0.28
PTPRU-205ENST00000460170 LDHBP07195 334 aaKnown RBP16.77■□□□□ 0.27
PTPRU-205ENST00000460170 GTF2F1P35269 517 aaKnown RBP eCLIP16.77■□□□□ 0.27
PTPRU-205ENST00000460170 HLTFQ14527 1009 aaKnown RBP eCLIP16.77■□□□□ 0.27
PTPRU-205ENST00000460170 UNC5CLQ8IV45 518 aa16.77■□□□□ 0.27
PTPRU-205ENST00000460170 DIS3L2Q8IYB7 885 aaKnown RBP16.77■□□□□ 0.27
PTPRU-205ENST00000460170 NSFL1CQ9UNZ2 370 aaKnown RBP16.77■□□□□ 0.27
PTPRU-205ENST00000460170 PRR36Q9H6K5 1346 aa16.76■□□□□ 0.27
PTPRU-205ENST00000460170 TBCAO75347 108 aaKnown RBP16.76■□□□□ 0.27
PTPRU-205ENST00000460170 RTCBQ9Y3I0 505 aaKnown RBP16.76■□□□□ 0.27
PTPRU-205ENST00000460170 GOLGA6L7A0A1B0GV03 622 aa16.76■□□□□ 0.27
PTPRU-205ENST00000460170 RRP36Q96EU6 259 aaKnown RBP16.76■□□□□ 0.27
PTPRU-205ENST00000460170 TPCN1Q9ULQ1 816 aa16.76■□□□□ 0.27
PTPRU-205ENST00000460170 ROBO2Q9HCK4 1378 aa16.76■□□□□ 0.27
PTPRU-205ENST00000460170 ERVV-2B6SEH9 535 aa16.76■□□□□ 0.27
PTPRU-205ENST00000460170 GNA11P29992 359 aa16.76■□□□□ 0.27
PTPRU-205ENST00000460170 TCIRG1Q13488 830 aa16.76■□□□□ 0.27
PTPRU-205ENST00000460170 SPAG5Q96R06 1193 aa16.76■□□□□ 0.27
PTPRU-205ENST00000460170 CDK12Q9NYV4 1490 aaPredicted RBP16.76■□□□□ 0.27
PTPRU-205ENST00000460170 CTAGE9A4FU28 777 aa16.76■□□□□ 0.27
PTPRU-205ENST00000460170 F8W031 263 aaPredicted RBP16.76■□□□□ 0.27
PTPRU-205ENST00000460170 FEZ1Q99689 392 aa16.76■□□□□ 0.27
PTPRU-205ENST00000460170 LSG1Q9H089 658 aaKnown RBP16.76■□□□□ 0.27
PTPRU-205ENST00000460170 VWA3AA6NCI4 1184 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 CUTAO60888 179 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 ZNF202O95125 648 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 PICALMQ13492 652 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 CTR9Q6PD62 1173 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 ZNF622Q969S3 477 aaKnown RBP eCLIP16.75■□□□□ 0.27
PTPRU-205ENST00000460170 LIG1P18858 919 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 GAS2L3Q86XJ1 694 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 CEP112Q8N8E3 955 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 GTPBP4Q9BZE4 634 aaKnown RBP16.75■□□□□ 0.27
PTPRU-205ENST00000460170 ZNF174Q15697 407 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 KRT79Q5XKE5 535 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 GPT2Q8TD30 523 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 DDX17Q92841 729 aaKnown RBP16.75■□□□□ 0.27
PTPRU-205ENST00000460170 RNF216Q9NWF9 866 aaPredicted RBP16.75■□□□□ 0.27
PTPRU-205ENST00000460170 KRT83P78385 493 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 IFFO1Q0D2I5 559 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 KRT40Q6A162 431 aa16.75■□□□□ 0.27
PTPRU-205ENST00000460170 USP8P40818 1118 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 RASEFQ8IZ41 740 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 PPP1R9BQ96SB3 815 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 UBXN1Q04323 297 aa16.74■□□□□ 0.27
PTPRU-205ENST00000460170 KARSQ15046 597 aaKnown RBP16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms