RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 BCAMP50895 628 aa28.45■■■□□ 2.14
PTPN4-207ENST00000460162 RARSP54136 660 aaKnown RBP28.45■■■□□ 2.14
PTPN4-207ENST00000460162 NBPF12Q5TAG4 269 aaPredicted RBP28.45■■■□□ 2.14
PTPN4-207ENST00000460162 LPIN2Q92539 896 aa28.45■■■□□ 2.14
PTPN4-207ENST00000460162 TDRD3Q9H7E2 651 aaKnown RBP28.45■■■□□ 2.14
PTPN4-207ENST00000460162 MAST3O60307 1309 aa28.44■■■□□ 2.14
PTPN4-207ENST00000460162 CIAO1O76071 339 aa28.44■■■□□ 2.14
PTPN4-207ENST00000460162 ZBTB48P10074 688 aaPredicted RBP28.44■■■□□ 2.14
PTPN4-207ENST00000460162 IREB2P48200 963 aaKnown RBP28.44■■■□□ 2.14
PTPN4-207ENST00000460162 NOM1Q5C9Z4 860 aaKnown RBP28.44■■■□□ 2.14
PTPN4-207ENST00000460162 ATG9AQ7Z3C6 839 aa28.44■■■□□ 2.14
PTPN4-207ENST00000460162 SUGT1Q9Y2Z0 365 aa28.44■■■□□ 2.14
PTPN4-207ENST00000460162 GRIK5Q16478 980 aa28.43■■■□□ 2.14
PTPN4-207ENST00000460162 ARHGAP45Q92619 1136 aa28.43■■■□□ 2.14
PTPN4-207ENST00000460162 TEKT1Q969V4 418 aa28.43■■■□□ 2.14
PTPN4-207ENST00000460162 CFHR5Q9BXR6 569 aa28.43■■■□□ 2.14
PTPN4-207ENST00000460162 MANSC4A6NHS7 340 aaPredicted RBP28.42■■■□□ 2.14
PTPN4-207ENST00000460162 TNNI2P48788 182 aa28.42■■■□□ 2.14
PTPN4-207ENST00000460162 CTU1Q7Z7A3 348 aaKnown RBP28.42■■■□□ 2.14
PTPN4-207ENST00000460162 SLC10A4Q96EP9 437 aa28.42■■■□□ 2.14
PTPN4-207ENST00000460162 WNK4Q96J92 1243 aa28.42■■■□□ 2.14
PTPN4-207ENST00000460162 CLMNQ96JQ2 1002 aa28.41■■■□□ 2.14
PTPN4-207ENST00000460162 LRRFIP2Q9Y608 721 aaKnown RBP28.41■■■□□ 2.14
PTPN4-207ENST00000460162 TBC1D8O95759 1140 aa28.4■■■□□ 2.14
PTPN4-207ENST00000460162 ALDH1A1P00352 501 aa28.4■■■□□ 2.14
PTPN4-207ENST00000460162 INHBEP58166 350 aa28.4■■■□□ 2.14
PTPN4-207ENST00000460162 ANKRD13AQ8IZ07 590 aa28.4■■■□□ 2.14
PTPN4-207ENST00000460162 TEPSINQ96N21 525 aa28.4■■■□□ 2.14
PTPN4-207ENST00000460162 SIL1Q9H173 461 aa28.4■■■□□ 2.14
PTPN4-207ENST00000460162 USP2O75604 605 aaPredicted RBP28.39■■■□□ 2.14
PTPN4-207ENST00000460162 ZNF296Q8WUU4 475 aaPredicted RBP28.39■■■□□ 2.14
PTPN4-207ENST00000460162 ZDHHC15Q96MV8 337 aa28.39■■■□□ 2.14
PTPN4-207ENST00000460162 MEIS3Q99687 375 aa28.39■■■□□ 2.14
PTPN4-207ENST00000460162 MRIQ9BWK5 157 aa28.39■■■□□ 2.14
PTPN4-207ENST00000460162 TCP10L2B9ZVM9 353 aa28.38■■■□□ 2.13
PTPN4-207ENST00000460162 RGS19P49795 217 aa28.38■■■□□ 2.13
PTPN4-207ENST00000460162 ATP2B3Q16720 1220 aa28.38■■■□□ 2.13
PTPN4-207ENST00000460162 INTS3Q68E01 1043 aaKnown RBP28.38■■■□□ 2.13
PTPN4-207ENST00000460162 WDR66Q8TBY9 1149 aa28.38■■■□□ 2.13
PTPN4-207ENST00000460162 IL15P40933 162 aaPredicted RBP28.37■■■□□ 2.13
PTPN4-207ENST00000460162 TMOD2Q9NZR1 351 aa28.37■■■□□ 2.13
PTPN4-207ENST00000460162 CEP126Q9P2H0 1117 aa28.37■■■□□ 2.13
PTPN4-207ENST00000460162 GPR25O00155 361 aa28.36■■■□□ 2.13
PTPN4-207ENST00000460162 TMEM39BQ9GZU3 492 aa28.36■■■□□ 2.13
PTPN4-207ENST00000460162 COPRSQ9NQ92 184 aa28.36■■■□□ 2.13
PTPN4-207ENST00000460162 RPAP1Q9BWH6 1393 aaPredicted RBP28.36■■■□□ 2.13
PTPN4-207ENST00000460162 GNAI3P08754 354 aa28.35■■■□□ 2.13
PTPN4-207ENST00000460162 HHIPL2Q6UWX4 724 aa28.35■■■□□ 2.13
PTPN4-207ENST00000460162 CDAN1Q8IWY9 1227 aa28.35■■■□□ 2.13
PTPN4-207ENST00000460162 PKN2Q16513 984 aaKnown RBP28.34■■■□□ 2.13
PTPN4-207ENST00000460162 FKBP1CQ5VVH2 108 aa28.34■■■□□ 2.13
PTPN4-207ENST00000460162 IFNL1Q8IU54 200 aa28.34■■■□□ 2.13
PTPN4-207ENST00000460162 GNL3LQ9NVN8 582 aaKnown RBP28.34■■■□□ 2.13
PTPN4-207ENST00000460162 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.34■■■□□ 2.13
PTPN4-207ENST00000460162 IPO8O15397 1037 aaKnown RBP28.33■■■□□ 2.13
PTPN4-207ENST00000460162 APOBEC3HQ6NTF7 200 aaKnown RBP28.33■■■□□ 2.13
PTPN4-207ENST00000460162 FAM83AQ86UY5 434 aa28.33■■■□□ 2.13
PTPN4-207ENST00000460162 PA2G4Q9UQ80 394 aaKnown RBP28.33■■■□□ 2.13
PTPN4-207ENST00000460162 SEMA3EO15041 775 aa28.32■■■□□ 2.12
PTPN4-207ENST00000460162 ZBTB22O15209 634 aa28.32■■■□□ 2.12
PTPN4-207ENST00000460162 CACNB3P54284 484 aa28.32■■■□□ 2.12
PTPN4-207ENST00000460162 MLLT1Q03111 559 aaPredicted RBP28.32■■■□□ 2.12
PTPN4-207ENST00000460162 MTX1Q13505 466 aa28.32■■■□□ 2.12
PTPN4-207ENST00000460162 IGF2BP3O00425 579 aaKnown RBP eCLIP28.31■■■□□ 2.12
PTPN4-207ENST00000460162 FKTNO75072 461 aa28.31■■■□□ 2.12
PTPN4-207ENST00000460162 TRIM27P14373 513 aa28.31■■■□□ 2.12
PTPN4-207ENST00000460162 GJA5P36382 358 aa28.31■■■□□ 2.12
PTPN4-207ENST00000460162 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.31■■■□□ 2.12
PTPN4-207ENST00000460162 ELP3Q9H9T3 547 aa28.31■■■□□ 2.12
PTPN4-207ENST00000460162 SALL1Q9NSC2 1324 aa28.31■■■□□ 2.12
PTPN4-207ENST00000460162 OPTNQ96CV9 577 aa28.3■■■□□ 2.12
PTPN4-207ENST00000460162 HOOK2Q96ED9 719 aa28.3■■■□□ 2.12
PTPN4-207ENST00000460162 VGLL4Q14135 290 aa28.29■■■□□ 2.12
PTPN4-207ENST00000460162 OTUD7BQ6GQQ9 843 aa28.29■■■□□ 2.12
PTPN4-207ENST00000460162 ATF7IPQ6VMQ6 1270 aa28.29■■■□□ 2.12
PTPN4-207ENST00000460162 PPP1R3FQ6ZSY5 799 aaPredicted RBP28.29■■■□□ 2.12
PTPN4-207ENST00000460162 R3HDMLQ9H3Y0 253 aa28.29■■■□□ 2.12
PTPN4-207ENST00000460162 DENND2AQ9ULE3 1009 aa28.29■■■□□ 2.12
PTPN4-207ENST00000460162 CSADQ9Y600 493 aa28.29■■■□□ 2.12
PTPN4-207ENST00000460162 TESPA1A2RU30 521 aaPredicted RBP28.28■■■□□ 2.12
PTPN4-207ENST00000460162 SRGAP3O43295 1099 aa28.28■■■□□ 2.12
PTPN4-207ENST00000460162 PRDX5P30044 214 aa28.27■■■□□ 2.12
PTPN4-207ENST00000460162 PHKA1P46020 1223 aa28.27■■■□□ 2.12
PTPN4-207ENST00000460162 MAP3K9P80192 1104 aa28.27■■■□□ 2.12
PTPN4-207ENST00000460162 HPS5Q9UPZ3 1129 aa28.27■■■□□ 2.12
PTPN4-207ENST00000460162 DAGLAQ9Y4D2 1042 aa28.27■■■□□ 2.12
PTPN4-207ENST00000460162 LDHBP07195 334 aaKnown RBP28.26■■■□□ 2.11
PTPN4-207ENST00000460162 PDS5AQ29RF7 1337 aaKnown RBP28.25■■■□□ 2.11
PTPN4-207ENST00000460162 BCAR3O75815 825 aa28.25■■■□□ 2.11
PTPN4-207ENST00000460162 DIXDC1Q155Q3 683 aa28.25■■■□□ 2.11
PTPN4-207ENST00000460162 CCDC102BQ68D86 513 aa28.25■■■□□ 2.11
PTPN4-207ENST00000460162 ZGPATQ8N5A5 531 aaKnown RBP28.25■■■□□ 2.11
PTPN4-207ENST00000460162 FRAT1Q92837 279 aaPredicted RBP28.25■■■□□ 2.11
PTPN4-207ENST00000460162 MYH2Q9UKX2 1941 aa28.25■■■□□ 2.11
PTPN4-207ENST00000460162 ADORA1P30542 326 aa28.24■■■□□ 2.11
PTPN4-207ENST00000460162 DCAF15Q66K64 600 aa28.24■■■□□ 2.11
PTPN4-207ENST00000460162 FBXO46Q6PJ61 603 aaPredicted RBP28.24■■■□□ 2.11
PTPN4-207ENST00000460162 DOCK2Q92608 1830 aa28.23■■■□□ 2.11
PTPN4-207ENST00000460162 SPDYE5A6NIY4 337 aa28.23■■■□□ 2.11
PTPN4-207ENST00000460162 GNAI2P04899 355 aa28.23■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms