RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 ZNF654Q8IZM8 581 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 GJD3Q8N144 294 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 PNISRQ8TF01 805 aaKnown RBP5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 ARMC5Q96C12 935 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 AGBL1Q96MI9 1066 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 CXorf56Q9H5V9 222 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 RRP7BPQ9NSQ0 103 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 SWAP70Q9UH65 585 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 PIK3C2BO00750 1634 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 ERVK-7P63135 1459 aa5.79□□□□□ -1.48
CCDC88A-209ENST00000456975 F6X3S4 739 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 KIF3BO15066 747 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 CTAGE5O15320 804 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 IPO7O95373 1038 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 IRS1P35568 1242 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 NAP1L1P55209 391 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 HMGN5P82970 282 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 NUTM2GQ5VZR2 741 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 ENOX1Q8TC92 643 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 RSPH1Q8WYR4 309 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 ZBTB9Q96C00 473 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 RSPH9Q9H1X1 276 aaPredicted RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 NEUROD4Q9HD90 331 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 SCUBE2Q9NQ36 999 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 COPRSQ9NQ92 184 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 SMC4Q9NTJ3 1288 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 V9GY48 417 aaPredicted RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 ABCC3O15438 1527 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 MROH1Q8NDA8 1641 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 EIF1AYO14602 144 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 EVA1CP58658 441 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 SH3BP2P78314 561 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 ZNF772Q68DY9 489 aaPredicted RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 SEPT12Q8IYM1 358 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 NCAPGQ9BPX3 1015 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 INO80BQ9C086 356 aaPredicted RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 KLK14Q9P0G3 267 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 CHPF2Q9P2E5 772 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 KLF15Q9UIH9 416 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 TSR3Q9UJK0 312 aaKnown RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 TMEM94Q12767 1356 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 CDK12Q9NYV4 1490 aaPredicted RBP5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 NWD1Q149M9 1564 aa5.78□□□□□ -1.48
CCDC88A-209ENST00000456975 KIF16BQ96L93 1317 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 SLIT1O75093 1534 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 BACH1O14867 736 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 ATF4P18848 351 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 ERVK-9P63128 1117 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 PAK2Q13177 524 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 C8orf34Q49A92 452 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 HS2ST1Q7LGA3 356 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 ANKK1Q8NFD2 765 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 CSRNP1Q96S65 589 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 C1QTNF2Q9BXJ5 285 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 SEZ6LQ9BYH1 1024 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 OSBPL7Q9BZF2 842 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 SCHIP1Q9P0W5 487 aaPredicted RBP5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 ANKRD50Q9ULJ7 1429 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 SETBP1Q9Y6X0 1596 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 ARHGAP23Q9P227 1491 aa5.77□□□□□ -1.49
CCDC88A-209ENST00000456975 PDGFAP04085 211 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 TGFB3P10600 412 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 ABCD1P33897 745 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 IGBP1P78318 339 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 USPL1Q5W0Q7 1092 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 MICALL1Q8N3F8 863 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 C22orf23Q9BZE7 217 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 DONSONQ9NYP3 566 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 SUN2Q9UH99 717 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 PARP3Q9Y6F1 533 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 PRDM15P57071 1507 aaPredicted RBP5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 NKTRP30414 1462 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 MSH6P52701 1360 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 KIF1CO43896 1103 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 VDRP11473 427 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 RXRBP28702 533 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 ZAP70P43403 619 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 FOXK2Q01167 660 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 DGKZQ13574 1117 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 TTC30AQ86WT1 665 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 LSM14AQ8ND56 463 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 KCNB2Q92953 911 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 LRRC27Q9C0I9 530 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 GGNBP2Q9H3C7 697 aa5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 CHD2O14647 1828 aaKnown RBP5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 AHDC1Q5TGY3 1603 aaPredicted RBP5.76□□□□□ -1.49
CCDC88A-209ENST00000456975 LMTK2Q8IWU2 1503 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 K7ELQ4 463 aaPredicted RBP5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 IPO5O00410 1097 aaKnown RBP5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 SKILP12757 684 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 IFT88Q13099 833 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 ARID5BQ14865 1188 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 C16orf87Q6PH81 154 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 ADGRD1Q6QNK2 874 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 VASH1Q7L8A9 365 aaPredicted RBP5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 HSCBQ8IWL3 235 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 CCDC146Q8IYE0 955 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 GPR152Q8TDT2 470 aa5.75□□□□□ -1.49
CCDC88A-209ENST00000456975 EPS8L3Q8TE67 593 aaKnown RBP5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms