RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 BIN1O00499 593 aa9.36□□□□□ -0.91
TMEM39A-202ENST00000438581 CCDC102BQ68D86 513 aa9.36□□□□□ -0.91
TMEM39A-202ENST00000438581 FILIP1Q7Z7B0 1213 aa9.36□□□□□ -0.91
TMEM39A-202ENST00000438581 CEP131Q9UPN4 1083 aa9.36□□□□□ -0.91
TMEM39A-202ENST00000438581 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.36□□□□□ -0.91
TMEM39A-202ENST00000438581 PHKA1P46020 1223 aa9.36□□□□□ -0.91
TMEM39A-202ENST00000438581 TTLL12Q14166 644 aaPredicted RBP9.36□□□□□ -0.91
TMEM39A-202ENST00000438581 KLHL10Q6JEL2 608 aa9.36□□□□□ -0.91
TMEM39A-202ENST00000438581 NBPF10Q6P3W6 841 aaKnown RBP9.36□□□□□ -0.91
TMEM39A-202ENST00000438581 PTPN12Q05209 780 aaKnown RBP9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 CCDC183Q5T5S1 534 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 ISM2Q6H9L7 571 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 TRMT1LQ7Z2T5 733 aaKnown RBP9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 KRT27Q7Z3Y8 459 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 TEX11Q8IYF3 940 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 IQGAP1P46940 1657 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 DIP2AQ14689 1571 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 CEP170BQ9Y4F5 1589 aaPredicted RBP9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 PTPDC1A2A3K4 754 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 PDE8BO95263 885 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 SYT1P21579 422 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 POLD1P28340 1107 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 EPS15P42566 896 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 DMTNQ08495 405 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 TTLL5Q6EMB2 1281 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 FAM173BQ6P4H8 233 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 DPP8Q6V1X1 898 aaPredicted RBP9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 MSL3Q8N5Y2 521 aaKnown RBP9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 EYA3Q99504 573 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 CCDC39Q9UFE4 941 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 PALLDQ8WX93 1383 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 DEPDC5O75140 1603 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 SASH1O94885 1247 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 RPS6KB1P23443 525 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 CHRNDQ07001 517 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 PI16Q6UXB8 463 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 SMIM5Q71RC9 77 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 USP48Q86UV5 1035 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 TECPR2O15040 1411 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 MROH1Q8NDA8 1641 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 AFF2P51816 1311 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 SNAP23O00161 211 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 F13A1P00488 732 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 CEP89Q96ST8 783 aa9.35□□□□□ -0.91
TMEM39A-202ENST00000438581 H0YIN7 160 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 MYO1BO43795 1136 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 HSPA4P34932 840 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 MAP2K1Q02750 393 aaPredicted RBP9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 CTDSPL2Q05D32 466 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 FILIP1LQ4L180 1135 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 JDP2Q8WYK2 163 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 KIF1CO43896 1103 aaKnown RBP9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 OFD1O75665 1012 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 MARCKSP29966 332 aaPredicted RBP9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 CCDC173Q0VFZ6 552 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 ERFEQ4G0M1 354 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 GIMAP6Q6P9H5 292 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 MKL1Q969V6 931 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 MYL10Q9BUA6 226 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 ANTXR1Q9H6X2 564 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 KIAA1210Q9ULL0 1709 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 NBPF26B4DH59 902 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 SUSD4Q5VX71 490 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 NBPF15Q8N660 670 aa9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 MAGEC2Q9UBF1 373 aaPredicted RBP9.34□□□□□ -0.91
TMEM39A-202ENST00000438581 UBE2HP62256 183 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 EGFL6Q8IUX8 553 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 CNNM3Q8NE01 707 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 HAUS7Q99871 368 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 ZSCAN16Q9H4T2 348 aaPredicted RBP9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 STAP2Q9UGK3 403 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 HDAC9Q9UKV0 1011 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 THRAP3Q9Y2W1 955 aaKnown RBP9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 SETSIPP0DME0 302 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 KLHL40Q2TBA0 621 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 HEATR3Q7Z4Q2 680 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 CCDC125Q86Z20 511 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 BANK1Q8NDB2 785 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 BMP2KQ9NSY1 1161 aaPredicted RBP9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 PLCG2P16885 1265 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 BAG6P46379 1132 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 GTF2IP78347 998 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 STIM1Q13586 685 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 RAB3GAP1Q15042 981 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 OTUD7BQ6GQQ9 843 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 WDR66Q8TBY9 1149 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 NBPF3Q9H094 633 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 PPLO60437 1756 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 PDE6AP16499 860 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 RXRBP28702 533 aa9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 NAP1L1P55209 391 aaKnown RBP9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 EIF6P56537 245 aaKnown RBP9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 SNRNP27Q8WVK2 155 aaKnown RBP9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 INTS4Q96HW7 963 aaKnown RBP9.33□□□□□ -0.92
TMEM39A-202ENST00000438581 RICTORQ6R327 1708 aa9.32□□□□□ -0.92
TMEM39A-202ENST00000438581 H7C1W4 665 aa9.32□□□□□ -0.92
TMEM39A-202ENST00000438581 KDM4FA0A1W2PPD8 638 aa9.32□□□□□ -0.92
TMEM39A-202ENST00000438581 MAPKAPK5Q8IW41 473 aa9.32□□□□□ -0.92
TMEM39A-202ENST00000438581 RASEFQ8IZ41 740 aa9.32□□□□□ -0.92
TMEM39A-202ENST00000438581 TTLL11Q8NHH1 800 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms