RNA–Protein interactions for RNA: ENST00000430104.5

SHH-202, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 677 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-202ENST00000430104 ABCF2Q9UG63 623 aa22.91■■□□□ 1.26
SHH-202ENST00000430104 DBNLQ9UJU6 430 aaKnown RBP22.91■■□□□ 1.26
SHH-202ENST00000430104 SERPINA10Q9UK55 444 aa22.91■■□□□ 1.26
SHH-202ENST00000430104 SPDYE2BA6NHP3 402 aa22.9■■□□□ 1.26
SHH-202ENST00000430104 MYO1BO43795 1136 aa22.9■■□□□ 1.26
SHH-202ENST00000430104 LDHBP07195 334 aaKnown RBP22.9■■□□□ 1.26
SHH-202ENST00000430104 UQCRFS1P1P0C7P4 283 aa22.9■■□□□ 1.26
SHH-202ENST00000430104 SPDYE6P0CI01 402 aa22.9■■□□□ 1.26
SHH-202ENST00000430104 ARID4AP29374 1257 aaPredicted RBP22.9■■□□□ 1.26
SHH-202ENST00000430104 PRDX5P30044 214 aa22.9■■□□□ 1.26
SHH-202ENST00000430104 SPATA5Q8NB90 893 aa22.9■■□□□ 1.26
SHH-202ENST00000430104 SNRKQ9NRH2 765 aa22.9■■□□□ 1.26
SHH-202ENST00000430104 SUGT1Q9Y2Z0 365 aa22.9■■□□□ 1.26
SHH-202ENST00000430104 MAST3O60307 1309 aa22.89■■□□□ 1.26
SHH-202ENST00000430104 AOX1Q06278 1338 aa22.89■■□□□ 1.26
SHH-202ENST00000430104 PITPNM2Q9BZ72 1349 aa22.89■■□□□ 1.26
SHH-202ENST00000430104 MCAMP43121 646 aa22.89■■□□□ 1.25
SHH-202ENST00000430104 CST9Q5W186 159 aa22.89■■□□□ 1.25
SHH-202ENST00000430104 CLASRPQ8N2M8 674 aaKnown RBP22.89■■□□□ 1.25
SHH-202ENST00000430104 TEKT1Q969V4 418 aa22.89■■□□□ 1.25
SHH-202ENST00000430104 TDRD3Q9H7E2 651 aaKnown RBP22.89■■□□□ 1.25
SHH-202ENST00000430104 VEZTQ9HBM0 779 aa22.89■■□□□ 1.25
SHH-202ENST00000430104 ABT1Q9ULW3 272 aaKnown RBP22.89■■□□□ 1.25
SHH-202ENST00000430104 IRX6P78412 446 aaPredicted RBP22.88■■□□□ 1.25
SHH-202ENST00000430104 PRAMEF18Q5VWM3 479 aa22.88■■□□□ 1.25
SHH-202ENST00000430104 ZGPATQ8N5A5 531 aaKnown RBP22.88■■□□□ 1.25
SHH-202ENST00000430104 EXOC6Q8TAG9 804 aa22.88■■□□□ 1.25
SHH-202ENST00000430104 SALL1Q9NSC2 1324 aa22.87■■□□□ 1.25
SHH-202ENST00000430104 SMARCA5O60264 1052 aaPredicted RBP22.87■■□□□ 1.25
SHH-202ENST00000430104 HDLBPQ00341 1268 aaKnown RBP22.87■■□□□ 1.25
SHH-202ENST00000430104 TBC1D9Q6ZT07 1266 aa22.87■■□□□ 1.25
SHH-202ENST00000430104 APOBEC3FQ8IUX4 373 aaKnown RBP22.87■■□□□ 1.25
SHH-202ENST00000430104 CDCA5Q96FF9 252 aa22.87■■□□□ 1.25
SHH-202ENST00000430104 AKAP11Q9UKA4 1901 aa22.86■■□□□ 1.25
SHH-202ENST00000430104 MYH2Q9UKX2 1941 aa22.86■■□□□ 1.25
SHH-202ENST00000430104 PDS5AQ29RF7 1337 aaKnown RBP22.86■■□□□ 1.25
SHH-202ENST00000430104 ZBTB22O15209 634 aa22.86■■□□□ 1.25
SHH-202ENST00000430104 IFIT2P09913 472 aaKnown RBP22.86■■□□□ 1.25
SHH-202ENST00000430104 DIXDC1Q155Q3 683 aa22.86■■□□□ 1.25
SHH-202ENST00000430104 LRRCC1Q9C099 1032 aa22.86■■□□□ 1.25
SHH-202ENST00000430104 DCTPP1Q9H773 170 aa22.86■■□□□ 1.25
SHH-202ENST00000430104 MKRN1Q9UHC7 482 aaKnown RBP22.86■■□□□ 1.25
SHH-202ENST00000430104 SPTY2D1Q68D10 685 aaPredicted RBP22.85■■□□□ 1.25
SHH-202ENST00000430104 ERICH6Q7L0X2 663 aa22.85■■□□□ 1.25
SHH-202ENST00000430104 DZIP1Q86YF9 867 aaKnown RBP22.85■■□□□ 1.25
SHH-202ENST00000430104 ZNF70Q9UC06 446 aaPredicted RBP22.85■■□□□ 1.25
SHH-202ENST00000430104 HHIPL2Q6UWX4 724 aa22.84■■□□□ 1.25
SHH-202ENST00000430104 DNAJC5GQ8N7S2 189 aa22.84■■□□□ 1.25
SHH-202ENST00000430104 MYO5AQ9Y4I1 1855 aaKnown RBP22.83■■□□□ 1.25
SHH-202ENST00000430104 ZAP70P43403 619 aa22.83■■□□□ 1.25
SHH-202ENST00000430104 ZDHHC15Q96MV8 337 aa22.83■■□□□ 1.25
SHH-202ENST00000430104 MRIQ9BWK5 157 aa22.83■■□□□ 1.25
SHH-202ENST00000430104 RAI14Q9P0K7 980 aa22.83■■□□□ 1.25
SHH-202ENST00000430104 TCP10L2B9ZVM9 353 aa22.82■■□□□ 1.24
SHH-202ENST00000430104 CACNB3P54284 484 aa22.82■■□□□ 1.24
SHH-202ENST00000430104 SPDYE2Q495Y8 402 aa22.82■■□□□ 1.24
SHH-202ENST00000430104 PAXIP1Q6ZW49 1069 aaPredicted RBP22.82■■□□□ 1.24
SHH-202ENST00000430104 ZNF512BQ96KM6 892 aaPredicted RBP22.82■■□□□ 1.24
SHH-202ENST00000430104 DEFB129Q9H1M3 183 aa22.82■■□□□ 1.24
SHH-202ENST00000430104 GBA2Q9HCG7 927 aaPredicted RBP22.82■■□□□ 1.24
SHH-202ENST00000430104 LRP2BPQ9P2M1 347 aa22.82■■□□□ 1.24
SHH-202ENST00000430104 DAGLAQ9Y4D2 1042 aa22.82■■□□□ 1.24
SHH-202ENST00000430104 NDUFB9Q9Y6M9 179 aa22.82■■□□□ 1.24
SHH-202ENST00000430104 DEFB115Q30KQ5 88 aa22.81■■□□□ 1.24
SHH-202ENST00000430104 APOBEC3HQ6NTF7 200 aaKnown RBP22.81■■□□□ 1.24
SHH-202ENST00000430104 C2orf69Q8N8R5 385 aa22.81■■□□□ 1.24
SHH-202ENST00000430104 KLRG1Q96E93 195 aa22.81■■□□□ 1.24
SHH-202ENST00000430104 TLL2Q9Y6L7 1015 aa22.81■■□□□ 1.24
SHH-202ENST00000430104 CYP2E1P05181 493 aaPredicted RBP22.8■■□□□ 1.24
SHH-202ENST00000430104 MECOMQ03112 1051 aa22.8■■□□□ 1.24
SHH-202ENST00000430104 TMOD2Q9NZR1 351 aa22.8■■□□□ 1.24
SHH-202ENST00000430104 GRM1Q13255 1194 aa22.79■■□□□ 1.24
SHH-202ENST00000430104 AAMPQ13685 434 aa22.79■■□□□ 1.24
SHH-202ENST00000430104 TTLL12Q14166 644 aaPredicted RBP22.79■■□□□ 1.24
SHH-202ENST00000430104 RASA3Q14644 834 aa22.79■■□□□ 1.24
SHH-202ENST00000430104 SLF2Q8IX21 1173 aa22.79■■□□□ 1.24
SHH-202ENST00000430104 CNTNAP1P78357 1384 aa22.78■■□□□ 1.24
SHH-202ENST00000430104 NF2P35240 595 aa22.78■■□□□ 1.24
SHH-202ENST00000430104 PRKG1Q13976 671 aa22.78■■□□□ 1.24
SHH-202ENST00000430104 SAPCD2Q86UD0 394 aa22.78■■□□□ 1.24
SHH-202ENST00000430104 PIH1D3Q9NQM4 214 aaKnown RBP22.78■■□□□ 1.24
SHH-202ENST00000430104 USP40Q9NVE5 1235 aa22.78■■□□□ 1.24
SHH-202ENST00000430104 RASSF10A6NK89 507 aa22.77■■□□□ 1.24
SHH-202ENST00000430104 TNNI2P48788 182 aa22.77■■□□□ 1.24
SHH-202ENST00000430104 HUNKP57058 714 aa22.77■■□□□ 1.24
SHH-202ENST00000430104 TNFAIP1Q13829 316 aa22.77■■□□□ 1.24
SHH-202ENST00000430104 CDC42EP5Q6NZY7 148 aa22.77■■□□□ 1.24
SHH-202ENST00000430104 MOB2Q70IA6 237 aa22.77■■□□□ 1.24
SHH-202ENST00000430104 NSUN4Q96CB9 384 aaKnown RBP22.77■■□□□ 1.24
SHH-202ENST00000430104 GSTO1P78417 241 aa22.76■■□□□ 1.23
SHH-202ENST00000430104 ZNF384Q8TF68 577 aa22.76■■□□□ 1.23
SHH-202ENST00000430104 DNAJC2Q99543 621 aaKnown RBP22.76■■□□□ 1.23
SHH-202ENST00000430104 ANTXR1Q9H6X2 564 aa22.76■■□□□ 1.23
SHH-202ENST00000430104 PPP2R3BQ9Y5P8 575 aa22.76■■□□□ 1.23
SHH-202ENST00000430104 MROH7-TTC4A0A0A0MT08 1334 aa22.76■■□□□ 1.23
SHH-202ENST00000430104 AK9Q5TCS8 1911 aa22.75■■□□□ 1.23
SHH-202ENST00000430104 LDHCP07864 332 aa22.75■■□□□ 1.23
SHH-202ENST00000430104 BTDP43251 543 aa22.75■■□□□ 1.23
SHH-202ENST00000430104 VEGFBP49765 207 aa22.75■■□□□ 1.23
SHH-202ENST00000430104 HDAC1Q13547 482 aaPredicted RBP22.75■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms