RNA–Protein interactions for RNA: ENST00000425436.7

SHOX2-202, Transcript of short stature homeobox 2, humanhuman

TSL 5 BASIC

Gene SHOX2, Length 1,513 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-202ENST00000425436 BOLA2Q9H3K6 86 aa18.9■□□□□ 0.62
SHOX2-202ENST00000425436 ECHDC1Q9NTX5 307 aa18.9■□□□□ 0.62
SHOX2-202ENST00000425436 MYO3BQ8WXR4 1341 aa18.9■□□□□ 0.62
SHOX2-202ENST00000425436 SCN4AP35499 1836 aa18.9■□□□□ 0.62
SHOX2-202ENST00000425436 H7C1D1 291 aa18.9■□□□□ 0.62
SHOX2-202ENST00000425436 MX1P20591 662 aa18.9■□□□□ 0.62
SHOX2-202ENST00000425436 TTF2Q9UNY4 1162 aaKnown RBP18.9■□□□□ 0.62
SHOX2-202ENST00000425436 SALL3Q9BXA9 1300 aa18.89■□□□□ 0.61
SHOX2-202ENST00000425436 IQCA1LA6NCM1 817 aa18.89■□□□□ 0.61
SHOX2-202ENST00000425436 ZBTB22O15209 634 aa18.89■□□□□ 0.61
SHOX2-202ENST00000425436 EGFRP00533 1210 aa18.89■□□□□ 0.61
SHOX2-202ENST00000425436 CYP2E1P05181 493 aaPredicted RBP18.89■□□□□ 0.61
SHOX2-202ENST00000425436 ATP5JP18859 108 aa18.89■□□□□ 0.61
SHOX2-202ENST00000425436 PRDX5P30044 214 aa18.89■□□□□ 0.61
SHOX2-202ENST00000425436 EPHX2P34913 555 aa18.89■□□□□ 0.61
SHOX2-202ENST00000425436 TBC1D10BQ4KMP7 808 aaPredicted RBP18.89■□□□□ 0.61
SHOX2-202ENST00000425436 TAF1DQ9H5J8 278 aaPredicted RBP18.89■□□□□ 0.61
SHOX2-202ENST00000425436 SDSP20132 328 aa18.88■□□□□ 0.61
SHOX2-202ENST00000425436 OGFOD1Q8N543 542 aa18.88■□□□□ 0.61
SHOX2-202ENST00000425436 GPATCH3Q96I76 525 aa18.88■□□□□ 0.61
SHOX2-202ENST00000425436 DNAJC2Q99543 621 aaKnown RBP18.88■□□□□ 0.61
SHOX2-202ENST00000425436 ANTXR1Q9H6X2 564 aa18.88■□□□□ 0.61
SHOX2-202ENST00000425436 MYO5AQ9Y4I1 1855 aaKnown RBP18.88■□□□□ 0.61
SHOX2-202ENST00000425436 PDS5AQ29RF7 1337 aaKnown RBP18.87■□□□□ 0.61
SHOX2-202ENST00000425436 LDHBP07195 334 aaKnown RBP18.87■□□□□ 0.61
SHOX2-202ENST00000425436 EAPPQ56P03 285 aaPredicted RBP18.87■□□□□ 0.61
SHOX2-202ENST00000425436 TRPM4Q8TD43 1214 aa18.87■□□□□ 0.61
SHOX2-202ENST00000425436 EDC3Q96F86 508 aaKnown RBP18.87■□□□□ 0.61
SHOX2-202ENST00000425436 PIH1D3Q9NQM4 214 aaKnown RBP18.87■□□□□ 0.61
SHOX2-202ENST00000425436 PCDHAC2Q9Y5I4 1007 aa18.87■□□□□ 0.61
SHOX2-202ENST00000425436 SALL1Q9NSC2 1324 aa18.87■□□□□ 0.61
SHOX2-202ENST00000425436 HIRAP54198 1017 aaPredicted RBP18.86■□□□□ 0.61
SHOX2-202ENST00000425436 ZNF280AP59817 542 aaPredicted RBP18.86■□□□□ 0.61
SHOX2-202ENST00000425436 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.86■□□□□ 0.61
SHOX2-202ENST00000425436 MYOZ2Q9NPC6 264 aa18.86■□□□□ 0.61
SHOX2-202ENST00000425436 ADARB2Q9NS39 739 aaKnown RBP18.86■□□□□ 0.61
SHOX2-202ENST00000425436 HDAC9Q9UKV0 1011 aa18.86■□□□□ 0.61
SHOX2-202ENST00000425436 GOLIM4O00461 696 aa18.85■□□□□ 0.61
SHOX2-202ENST00000425436 KIF3CO14782 793 aa18.85■□□□□ 0.61
SHOX2-202ENST00000425436 MAP4K4O95819 1239 aaPredicted RBP18.85■□□□□ 0.61
SHOX2-202ENST00000425436 POTEIP0CG38 1075 aa18.85■□□□□ 0.61
SHOX2-202ENST00000425436 POTEJP0CG39 1038 aa18.85■□□□□ 0.61
SHOX2-202ENST00000425436 ZGPATQ8N5A5 531 aaKnown RBP18.85■□□□□ 0.61
SHOX2-202ENST00000425436 LRP2BPQ9P2M1 347 aa18.85■□□□□ 0.61
SHOX2-202ENST00000425436 TTC41PQ6P2S7 1318 aa18.85■□□□□ 0.61
SHOX2-202ENST00000425436 REC8O95072 547 aa18.84■□□□□ 0.61
SHOX2-202ENST00000425436 RBM5P52756 815 aaKnown RBP eCLIP18.84■□□□□ 0.61
SHOX2-202ENST00000425436 PI4K2BQ8TCG2 481 aa18.84■□□□□ 0.61
SHOX2-202ENST00000425436 HAUS7Q99871 368 aa18.84■□□□□ 0.61
SHOX2-202ENST00000425436 RAI14Q9P0K7 980 aa18.84■□□□□ 0.61
SHOX2-202ENST00000425436 ADAMTSL1Q8N6G6 1762 aa18.84■□□□□ 0.61
SHOX2-202ENST00000425436 DIXDC1Q155Q3 683 aa18.84■□□□□ 0.61
SHOX2-202ENST00000425436 KIF4BQ2VIQ3 1234 aa18.84■□□□□ 0.61
SHOX2-202ENST00000425436 CFAP100Q494V2 611 aa18.84■□□□□ 0.61
SHOX2-202ENST00000425436 SPTY2D1Q68D10 685 aaPredicted RBP18.84■□□□□ 0.61
SHOX2-202ENST00000425436 CLEC11AQ9Y240 323 aa18.84■□□□□ 0.61
SHOX2-202ENST00000425436 SUGT1Q9Y2Z0 365 aa18.84■□□□□ 0.61
SHOX2-202ENST00000425436 CRKP46108 304 aa18.83■□□□□ 0.6
SHOX2-202ENST00000425436 MECOMQ03112 1051 aa18.83■□□□□ 0.6
SHOX2-202ENST00000425436 NBPF9Q3BBW0 867 aa18.83■□□□□ 0.6
SHOX2-202ENST00000425436 USP50Q70EL3 339 aaPredicted RBP18.83■□□□□ 0.6
SHOX2-202ENST00000425436 DZIP1Q86YF9 867 aaKnown RBP18.83■□□□□ 0.6
SHOX2-202ENST00000425436 PAG1Q9NWQ8 432 aa18.83■□□□□ 0.6
SHOX2-202ENST00000425436 ASTN2O75129 1339 aaPredicted RBP18.83■□□□□ 0.6
SHOX2-202ENST00000425436 ERC2O15083 957 aa18.82■□□□□ 0.6
SHOX2-202ENST00000425436 IDH1O75874 414 aaKnown RBP18.82■□□□□ 0.6
SHOX2-202ENST00000425436 GLRX3O76003 335 aaKnown RBP18.82■□□□□ 0.6
SHOX2-202ENST00000425436 DLGAP5Q15398 846 aa18.82■□□□□ 0.6
SHOX2-202ENST00000425436 PNMA8AQ86V59 439 aaPredicted RBP18.82■□□□□ 0.6
SHOX2-202ENST00000425436 ZNF384Q8TF68 577 aa18.82■□□□□ 0.6
SHOX2-202ENST00000425436 PRMT6Q96LA8 375 aaPredicted RBP18.82■□□□□ 0.6
SHOX2-202ENST00000425436 WNT10BO00744 389 aa18.81■□□□□ 0.6
SHOX2-202ENST00000425436 TEKT1Q969V4 418 aa18.81■□□□□ 0.6
SHOX2-202ENST00000425436 NSUN4Q96CB9 384 aaKnown RBP18.81■□□□□ 0.6
SHOX2-202ENST00000425436 SERPINA10Q9UK55 444 aa18.81■□□□□ 0.6
SHOX2-202ENST00000425436 MYH2Q9UKX2 1941 aa18.81■□□□□ 0.6
SHOX2-202ENST00000425436 POLR2AP24928 1970 aaKnown RBP18.8■□□□□ 0.6
SHOX2-202ENST00000425436 EPB41L2O43491 1005 aaKnown RBP18.8■□□□□ 0.6
SHOX2-202ENST00000425436 TTF1Q15361 905 aaPredicted RBP18.8■□□□□ 0.6
SHOX2-202ENST00000425436 SNX21Q969T3 373 aa18.8■□□□□ 0.6
SHOX2-202ENST00000425436 MAST3O60307 1309 aa18.8■□□□□ 0.6
SHOX2-202ENST00000425436 MMP14P50281 582 aa18.79■□□□□ 0.6
SHOX2-202ENST00000425436 HDLBPQ00341 1268 aaKnown RBP18.79■□□□□ 0.6
SHOX2-202ENST00000425436 SCAF8Q9UPN6 1271 aaKnown RBP18.79■□□□□ 0.6
SHOX2-202ENST00000425436 SPDYE2BA6NHP3 402 aa18.79■□□□□ 0.6
SHOX2-202ENST00000425436 SPDYE6P0CI01 402 aa18.79■□□□□ 0.6
SHOX2-202ENST00000425436 HHIPL2Q6UWX4 724 aa18.79■□□□□ 0.6
SHOX2-202ENST00000425436 MAGEB6Q8N7X4 407 aa18.79■□□□□ 0.6
SHOX2-202ENST00000425436 MTMR14Q8NCE2 650 aa18.79■□□□□ 0.6
SHOX2-202ENST00000425436 IL27Q8NEV9 243 aa18.79■□□□□ 0.6
SHOX2-202ENST00000425436 ZBED3Q96IU2 234 aaPredicted RBP18.79■□□□□ 0.6
SHOX2-202ENST00000425436 MRIQ9BWK5 157 aa18.79■□□□□ 0.6
SHOX2-202ENST00000425436 TRIM6-TRIM34B2RNG4 842 aa18.78■□□□□ 0.6
SHOX2-202ENST00000425436 CHGBP05060 677 aa18.78■□□□□ 0.6
SHOX2-202ENST00000425436 MAP3K12Q12852 859 aa18.78■□□□□ 0.6
SHOX2-202ENST00000425436 SLFNL1Q499Z3 407 aa18.78■□□□□ 0.6
SHOX2-202ENST00000425436 MAP1SQ66K74 1059 aaPredicted RBP18.78■□□□□ 0.6
SHOX2-202ENST00000425436 NAA16Q6N069 864 aaPredicted RBP18.78■□□□□ 0.6
SHOX2-202ENST00000425436 APOBEC3HQ6NTF7 200 aaKnown RBP18.78■□□□□ 0.6
SHOX2-202ENST00000425436 ZDHHC15Q96MV8 337 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms