RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 RASIP1Q5U651 963 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CWF19L1Q69YN2 538 aaKnown RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 DESI2Q9BSY9 194 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 OPA1O60313 960 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 MYL1P05976 194 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 TDRD7Q8NHU6 1098 aaKnown RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 ITM2BQ9Y287 266 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 FAM133BQ5BKY9 247 aaKnown RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 SIKE1Q9BRV8 207 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CLSTN2Q9H4D0 955 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 LMOD1P29536 600 aaPredicted RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 DMPKQ09013 629 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 PDCLQ13371 301 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC38Q502W7 563 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC158Q5M9N0 1113 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 ABCF3Q9NUQ8 709 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 IRAK1P51617 712 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 ZBTB21Q9ULJ3 1066 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CHMP2BQ9UQN3 213 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 SSH1Q8WYL5 1049 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 TAF11Q15544 211 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 SEPT7Q16181 437 aaKnown RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 SLC44A4Q53GD3 710 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 WDR24Q96S15 920 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 LACTBP83111 547 aaPredicted RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 NANOGNBQ7Z5D8 188 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 TEX14Q8IWB6 1497 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 DIAPH2O60879 1101 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC15Q0P6D6 951 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 SDCCAG8Q86SQ7 713 aaPredicted RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 BCAS4Q8TDM0 211 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 DDX19AQ9NUU7 478 aaKnown RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 SHANK2Q9UPX8 1470 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 ZFXP17010 805 aaPredicted RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC83Q8IWF9 413 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 FANCLQ9NW38 375 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 ABCA5Q8WWZ7 1642 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 KCNV1Q6PIU1 500 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 PAPOLBQ9NRJ5 636 aaKnown RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 LRRD1A4D1F6 860 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 KRT85P78386 507 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 DYNC1I2Q13409 638 aaKnown RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC178Q5BJE1 867 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 FAM173BQ6P4H8 233 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 PROSER2Q86WR7 435 aaPredicted RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 FAM184BQ9ULE4 1060 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 EXOSC9Q06265 439 aaKnown RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CFAP100Q494V2 611 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 NAT1P18440 290 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 DHX58Q96C10 678 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 KLC1Q07866 573 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 CCDC148Q8NFR7 591 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 R3HDM2Q9Y2K5 976 aaKnown RBP3.85□□□□□ -1.79
SYNE1-212ENST00000423061 HSF2BPO75031 334 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 STK3Q13188 491 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 MAST1Q9Y2H9 1570 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 RAD21O60216 631 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 GGCXP38435 758 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 KCNB2Q92953 911 aa3.85□□□□□ -1.79
SYNE1-212ENST00000423061 RABL2BQ9UNT1 228 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 CDC37L1Q7L3B6 337 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 USP6NLQ92738 828 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 IGF1RP08069 1367 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 ATAD2Q6PL18 1390 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 RTN3O95197 1032 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-212ENST00000423061 SF3B2Q13435 895 aaKnown RBP3.84□□□□□ -1.79
SYNE1-212ENST00000423061 CSPG5O95196 566 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 C16orf87Q6PH81 154 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 PPANQ9NQ55 473 aaKnown RBP3.84□□□□□ -1.79
SYNE1-212ENST00000423061 MTX1Q13505 466 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 RCSD1Q6JBY9 416 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 CPLX4Q7Z7G2 160 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 PCMTD1Q96MG8 357 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-212ENST00000423061 E7EVH7 732 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 BRD1O95696 1058 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 PAPOLAP51003 745 aaKnown RBP3.84□□□□□ -1.79
SYNE1-212ENST00000423061 TEKT4Q8WW24 435 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 FGD4Q96M96 766 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 LRRC27Q9C0I9 530 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 ATP6V0A4Q9HBG4 840 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 HDGFP51858 240 aaKnown RBP3.84□□□□□ -1.79
SYNE1-212ENST00000423061 FAM81BQ96LP2 452 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 JAKMIP1Q96N16 626 aaKnown RBP3.84□□□□□ -1.79
SYNE1-212ENST00000423061 SDSP20132 328 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 C1QTNF12Q5T7M4 302 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 EFCAB2Q5VUJ9 269 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 CPLX1O14810 134 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 SESN3P58005 492 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 GRIK3Q13003 919 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 PPP2R2CQ9Y2T4 447 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 LAMC3Q9Y6N6 1575 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 AP5Z1O43299 807 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 TRIM21P19474 475 aaKnown RBP3.84□□□□□ -1.79
SYNE1-212ENST00000423061 BMP2KLQ5H9B9 411 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 CASP8Q14790 479 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 ANKRD23Q86SG2 305 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 NBPF7P0C2Y1 421 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-212ENST00000423061 SH3BGRP55822 239 aaPredicted RBP3.84□□□□□ -1.79
SYNE1-212ENST00000423061 ATP11AP98196 1134 aa3.84□□□□□ -1.79
SYNE1-212ENST00000423061 ANKRD24Q8TF21 1146 aa3.84□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms