RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 FAM205AQ6ZU69 1335 aa20.52■□□□□ 0.87
CCDC28B-202ENST00000421922 GPAA1O43292 621 aa20.52■□□□□ 0.87
CCDC28B-202ENST00000421922 ECE2O60344 883 aa20.52■□□□□ 0.87
CCDC28B-202ENST00000421922 GTF2IP78347 998 aa20.52■□□□□ 0.87
CCDC28B-202ENST00000421922 MFSD14BQ5SR56 506 aa20.52■□□□□ 0.87
CCDC28B-202ENST00000421922 NLGN2Q8NFZ4 835 aa20.52■□□□□ 0.87
CCDC28B-202ENST00000421922 FER1L6Q2WGJ9 1857 aa20.51■□□□□ 0.87
CCDC28B-202ENST00000421922 RNF20Q5VTR2 975 aa20.51■□□□□ 0.87
CCDC28B-202ENST00000421922 LARGE2Q8N3Y3 721 aa20.51■□□□□ 0.87
CCDC28B-202ENST00000421922 DDRGK1Q96HY6 314 aa20.51■□□□□ 0.87
CCDC28B-202ENST00000421922 NOL10Q9BSC4 688 aaKnown RBP20.51■□□□□ 0.87
CCDC28B-202ENST00000421922 VPS33BQ9H267 617 aa20.51■□□□□ 0.87
CCDC28B-202ENST00000421922 TAOK3Q9H2K8 898 aa20.51■□□□□ 0.87
CCDC28B-202ENST00000421922 U3KPZ7 1027 aaPredicted RBP20.51■□□□□ 0.87
CCDC28B-202ENST00000421922 TCRBV5S4A2TA0A5A2 114 aa20.5■□□□□ 0.87
CCDC28B-202ENST00000421922 PRDX5P30044 214 aa20.5■□□□□ 0.87
CCDC28B-202ENST00000421922 PTH1RQ03431 593 aa20.5■□□□□ 0.87
CCDC28B-202ENST00000421922 TTLL5Q6EMB2 1281 aa20.5■□□□□ 0.87
CCDC28B-202ENST00000421922 SLF2Q8IX21 1173 aa20.5■□□□□ 0.87
CCDC28B-202ENST00000421922 PUS7LQ9H0K6 701 aaKnown RBP20.5■□□□□ 0.87
CCDC28B-202ENST00000421922 RBM8AQ9Y5S9 174 aaKnown RBP20.5■□□□□ 0.87
CCDC28B-202ENST00000421922 MBD4O95243 580 aa20.49■□□□□ 0.87
CCDC28B-202ENST00000421922 MECOMQ03112 1051 aa20.49■□□□□ 0.87
CCDC28B-202ENST00000421922 DSCC1Q9BVC3 393 aa20.49■□□□□ 0.87
CCDC28B-202ENST00000421922 ZNF277Q9NRM2 450 aaPredicted RBP20.49■□□□□ 0.87
CCDC28B-202ENST00000421922 MAGEB6P1A0A0J9YX57 407 aa20.48■□□□□ 0.87
CCDC28B-202ENST00000421922 LDHCP07864 332 aa20.48■□□□□ 0.87
CCDC28B-202ENST00000421922 ZKSCAN1P17029 563 aaPredicted RBP20.48■□□□□ 0.87
CCDC28B-202ENST00000421922 NIM1KQ8IY84 436 aa20.48■□□□□ 0.87
CCDC28B-202ENST00000421922 MAP4K1Q92918 833 aa20.48■□□□□ 0.87
CCDC28B-202ENST00000421922 NSUN4Q96CB9 384 aaKnown RBP20.48■□□□□ 0.87
CCDC28B-202ENST00000421922 SUGT1Q9Y2Z0 365 aa20.48■□□□□ 0.87
CCDC28B-202ENST00000421922 MYH2Q9UKX2 1941 aa20.47■□□□□ 0.87
CCDC28B-202ENST00000421922 APPP05067 770 aa20.47■□□□□ 0.87
CCDC28B-202ENST00000421922 GNAT2P19087 354 aa20.47■□□□□ 0.87
CCDC28B-202ENST00000421922 HSPA4P34932 840 aa20.47■□□□□ 0.87
CCDC28B-202ENST00000421922 IARSP41252 1262 aaKnown RBP20.47■□□□□ 0.87
CCDC28B-202ENST00000421922 ANAPC15P60006 121 aa20.47■□□□□ 0.87
CCDC28B-202ENST00000421922 MIGA1Q8NAN2 632 aa20.47■□□□□ 0.87
CCDC28B-202ENST00000421922 HSPD1P10809 573 aaKnown RBP20.46■□□□□ 0.87
CCDC28B-202ENST00000421922 CTNNA3Q9UI47 895 aa20.46■□□□□ 0.87
CCDC28B-202ENST00000421922 USP17L3A6NCW0 530 aa20.45■□□□□ 0.86
CCDC28B-202ENST00000421922 USP17L4A6NCW7 530 aa20.45■□□□□ 0.86
CCDC28B-202ENST00000421922 STRIP1Q5VSL9 837 aa20.45■□□□□ 0.86
CCDC28B-202ENST00000421922 USP17L1Q7RTZ2 530 aa20.45■□□□□ 0.86
CCDC28B-202ENST00000421922 NACAP1Q9BZK3 213 aa20.45■□□□□ 0.86
CCDC28B-202ENST00000421922 ARMT1Q9H993 441 aa20.45■□□□□ 0.86
CCDC28B-202ENST00000421922 DAXXQ9UER7 740 aaPredicted RBP20.45■□□□□ 0.86
CCDC28B-202ENST00000421922 PSME4Q14997 1843 aa20.45■□□□□ 0.86
CCDC28B-202ENST00000421922 BAG3O95817 575 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 RABEP1Q15276 862 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 GPR162Q16538 588 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 JDP2Q8WYK2 163 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 SCN9AQ15858 1988 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 BECN1Q14457 450 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 IFFO2Q5TF58 517 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 VPS53Q5VIR6 699 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 CREB3L3Q68CJ9 461 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 CERS3Q8IU89 383 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 LCORLQ8N3X6 602 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 STRBPQ96SI9 672 aaKnown RBP20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 SLC4A4Q9Y6R1 1079 aa20.44■□□□□ 0.86
CCDC28B-202ENST00000421922 MROH7-TTC4A0A0A0MT08 1334 aa20.43■□□□□ 0.86
CCDC28B-202ENST00000421922 F8W031 263 aaPredicted RBP20.43■□□□□ 0.86
CCDC28B-202ENST00000421922 FKBP1AP62942 108 aaKnown RBP20.43■□□□□ 0.86
CCDC28B-202ENST00000421922 CRNKL1Q9BZJ0 848 aaKnown RBP20.43■□□□□ 0.86
CCDC28B-202ENST00000421922 RPAP1Q9BWH6 1393 aaPredicted RBP20.43■□□□□ 0.86
CCDC28B-202ENST00000421922 LTBP3Q9NS15 1303 aa20.42■□□□□ 0.86
CCDC28B-202ENST00000421922 SLC27A2O14975 620 aa20.42■□□□□ 0.86
CCDC28B-202ENST00000421922 NECTIN1Q15223 517 aa20.42■□□□□ 0.86
CCDC28B-202ENST00000421922 IMMTQ16891 758 aaKnown RBP20.42■□□□□ 0.86
CCDC28B-202ENST00000421922 ADGRA1Q86SQ6 560 aa20.42■□□□□ 0.86
CCDC28B-202ENST00000421922 AATFQ9NY61 560 aaKnown RBP eCLIP20.42■□□□□ 0.86
CCDC28B-202ENST00000421922 PALD1Q9ULE6 856 aa20.42■□□□□ 0.86
CCDC28B-202ENST00000421922 TTF2Q9UNY4 1162 aaKnown RBP20.42■□□□□ 0.86
CCDC28B-202ENST00000421922 PATL2C9JE40 543 aaKnown RBP20.41■□□□□ 0.86
CCDC28B-202ENST00000421922 NFKBIEO00221 500 aa20.41■□□□□ 0.86
CCDC28B-202ENST00000421922 TDO2P48775 406 aa20.41■□□□□ 0.86
CCDC28B-202ENST00000421922 KRT32Q14532 448 aa20.41■□□□□ 0.86
CCDC28B-202ENST00000421922 DIXDC1Q155Q3 683 aa20.41■□□□□ 0.86
CCDC28B-202ENST00000421922 NAPBQ9H115 298 aa20.41■□□□□ 0.86
CCDC28B-202ENST00000421922 ZNRF3Q9ULT6 936 aa20.41■□□□□ 0.86
CCDC28B-202ENST00000421922 SNX14Q9Y5W7 946 aa20.41■□□□□ 0.86
CCDC28B-202ENST00000421922 MYO3BQ8WXR4 1341 aa20.41■□□□□ 0.86
CCDC28B-202ENST00000421922 LAMA4Q16363 1823 aa20.4■□□□□ 0.86
CCDC28B-202ENST00000421922 ST18O60284 1047 aa20.4■□□□□ 0.86
CCDC28B-202ENST00000421922 PLCG2P16885 1265 aa20.4■□□□□ 0.86
CCDC28B-202ENST00000421922 DYNLL1P63167 89 aaKnown RBP20.4■□□□□ 0.86
CCDC28B-202ENST00000421922 GRIK5Q16478 980 aa20.4■□□□□ 0.86
CCDC28B-202ENST00000421922 DACT2Q5SW24 774 aa20.4■□□□□ 0.86
CCDC28B-202ENST00000421922 HSCBQ8IWL3 235 aa20.4■□□□□ 0.86
CCDC28B-202ENST00000421922 ZNF384Q8TF68 577 aa20.4■□□□□ 0.86
CCDC28B-202ENST00000421922 ZNF646O15015 1829 aaPredicted RBP20.4■□□□□ 0.86
CCDC28B-202ENST00000421922 PSMA5P28066 241 aa20.39■□□□□ 0.85
CCDC28B-202ENST00000421922 RASSF7Q02833 373 aa20.39■□□□□ 0.85
CCDC28B-202ENST00000421922 ARHGAP27Q6ZUM4 889 aa20.39■□□□□ 0.85
CCDC28B-202ENST00000421922 RIOK1Q9BRS2 568 aaKnown RBP20.39■□□□□ 0.85
CCDC28B-202ENST00000421922 MXD3Q9BW11 206 aa20.39■□□□□ 0.85
CCDC28B-202ENST00000421922 YDJCA8MPS7 323 aa20.38■□□□□ 0.85
CCDC28B-202ENST00000421922 CERS5Q8N5B7 392 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms