RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 A0A0D9SFI3 127 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 SEMA3EO15041 775 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 UFL1O94874 794 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 HOXA10P31260 410 aaPredicted RBP7.17□□□□□ -1.26
HMGB3-202ENST00000419110 MCAMP43121 646 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 FKBP4Q02790 459 aaKnown RBP eCLIP7.17□□□□□ -1.26
HMGB3-202ENST00000419110 RABEP1Q15276 862 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 ERICH6Q7L0X2 663 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 ZNF804AQ7Z570 1209 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 MASTLQ96GX5 879 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 IPO9Q96P70 1041 aaKnown RBP7.17□□□□□ -1.26
HMGB3-202ENST00000419110 MFRPQ9BY79 579 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 ZSWIM6Q9HCJ5 1215 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 ANKIB1Q9P2G1 1089 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 GGA1Q9UJY5 639 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 MINPP1Q9UNW1 487 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 DICER1Q9UPY3 1922 aaKnown RBP7.17□□□□□ -1.26
HMGB3-202ENST00000419110 SCN9AQ15858 1988 aa7.17□□□□□ -1.26
HMGB3-202ENST00000419110 KLRG2A4D1S0 409 aaPredicted RBP7.16□□□□□ -1.26
HMGB3-202ENST00000419110 BBOX1O75936 387 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 ATP2B4P23634 1241 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 POLD1P28340 1107 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 ALDH1B1P30837 517 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 ZAP70P43403 619 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 ANAPC15P60006 121 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 RASGRF1Q13972 1273 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 WASHC4Q2M389 1173 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 RNF20Q5VTR2 975 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 STYK1Q6J9G0 422 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 C2CD5Q86YS7 1000 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 SPATA5Q8NB90 893 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 EDC3Q96F86 508 aaKnown RBP7.16□□□□□ -1.26
HMGB3-202ENST00000419110 SNRKQ9NRH2 765 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 HELLSQ9NRZ9 838 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 DENND2AQ9ULE3 1009 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 LEMD3Q9Y2U8 911 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 NDUFB9Q9Y6M9 179 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 MAST3O60307 1309 aa7.16□□□□□ -1.26
HMGB3-202ENST00000419110 MYH6P13533 1939 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 H0YIN7 160 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 RNF113AO15541 343 aaKnown RBP7.15□□□□□ -1.26
HMGB3-202ENST00000419110 FRAT2O75474 233 aaPredicted RBP7.15□□□□□ -1.26
HMGB3-202ENST00000419110 IDH1O75874 414 aaKnown RBP7.15□□□□□ -1.26
HMGB3-202ENST00000419110 SRGNP10124 158 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 MAP3K12Q12852 859 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 SCARF1Q14162 830 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 ZMYM1Q5SVZ6 1142 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 PI16Q6UXB8 463 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 ZGPATQ8N5A5 531 aaKnown RBP7.15□□□□□ -1.26
HMGB3-202ENST00000419110 IL27Q8NEV9 243 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 APPBP2Q92624 585 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 FAM227BQ96M60 508 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 USP26Q9BXU7 913 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 HMG20BQ9P0W2 317 aa7.15□□□□□ -1.26
HMGB3-202ENST00000419110 MYH15Q9Y2K3 1946 aa7.15□□□□□ -1.27
HMGB3-202ENST00000419110 PDE6AP16499 860 aa7.14□□□□□ -1.27
HMGB3-202ENST00000419110 ZKSCAN1P17029 563 aaPredicted RBP7.14□□□□□ -1.27
HMGB3-202ENST00000419110 HIBADHP31937 336 aaKnown RBP7.14□□□□□ -1.27
HMGB3-202ENST00000419110 GYG1P46976 350 aa7.14□□□□□ -1.27
HMGB3-202ENST00000419110 MCMDC2Q4G0Z9 681 aa7.14□□□□□ -1.27
HMGB3-202ENST00000419110 GPR153Q6NV75 609 aa7.14□□□□□ -1.27
HMGB3-202ENST00000419110 PRPF40BQ6NWY9 871 aaKnown RBP7.14□□□□□ -1.27
HMGB3-202ENST00000419110 TMED8Q6PL24 325 aaPredicted RBP7.14□□□□□ -1.27
HMGB3-202ENST00000419110 CNKSR1Q969H4 720 aa7.14□□□□□ -1.27
HMGB3-202ENST00000419110 ZNF622Q969S3 477 aaKnown RBP eCLIP7.14□□□□□ -1.273e-7■■■■□ 22
HMGB3-202ENST00000419110 MTFR1LQ9H019 292 aa7.14□□□□□ -1.27
HMGB3-202ENST00000419110 LSG1Q9H089 658 aaKnown RBP7.14□□□□□ -1.27
HMGB3-202ENST00000419110 PODXL2Q9NZ53 605 aa7.14□□□□□ -1.27
HMGB3-202ENST00000419110 ATP6V0A2Q9Y487 856 aa7.14□□□□□ -1.27
HMGB3-202ENST00000419110 RPAP1Q9BWH6 1393 aaPredicted RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 ZMYM6O95789 1325 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 C6orf229H3BNL8 230 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 SNAP23O00161 211 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 IGSF3O75054 1194 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 CYP2E1P05181 493 aaPredicted RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 KLRK1P26718 216 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 HSPA4P34932 840 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 ADD2P35612 726 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 BCAMP50895 628 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 GPSM2P81274 684 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 CHAF1AQ13111 956 aaPredicted RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 KRT32Q14532 448 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 UBE3CQ15386 1083 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 VARS2Q5ST30 1063 aaKnown RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 SPTY2D1Q68D10 685 aaPredicted RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 DPP8Q6V1X1 898 aaPredicted RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 C15orf52Q6ZUT6 534 aaKnown RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 ZNF589Q86UQ0 364 aaPredicted RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 DZIP1Q86YF9 867 aaKnown RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 SP8Q8IXZ3 490 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 AIDAQ96BJ3 306 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 EYA3Q99504 573 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 IL25Q9H293 177 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 ANTXR1Q9H6X2 564 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 PIH1D3Q9NQM4 214 aaKnown RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 LRP2BPQ9P2M1 347 aa7.13□□□□□ -1.27
HMGB3-202ENST00000419110 NSFL1CQ9UNZ2 370 aaKnown RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 RBM8AQ9Y5S9 174 aaKnown RBP7.13□□□□□ -1.27
HMGB3-202ENST00000419110 SNED1Q8TER0 1413 aa7.12□□□□□ -1.27
HMGB3-202ENST00000419110 ZNF532Q9HCE3 1301 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms