RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 IGSF3O75054 1194 aa21.78■■□□□ 1.08
SDC1-203ENST00000403076 GSTO1P78417 241 aa21.78■■□□□ 1.08
SDC1-203ENST00000403076 UBE3CQ15386 1083 aa21.78■■□□□ 1.08
SDC1-203ENST00000403076 SLFNL1Q499Z3 407 aa21.78■■□□□ 1.08
SDC1-203ENST00000403076 C8orf34Q49A92 452 aa21.78■■□□□ 1.08
SDC1-203ENST00000403076 RSBN1LQ6PCB5 846 aaPredicted RBP21.78■■□□□ 1.08
SDC1-203ENST00000403076 NSUN4Q96CB9 384 aaKnown RBP21.78■■□□□ 1.08
SDC1-203ENST00000403076 FAM227BQ96M60 508 aa21.78■■□□□ 1.08
SDC1-203ENST00000403076 VIL1P09327 827 aaKnown RBP21.77■■□□□ 1.08
SDC1-203ENST00000403076 ZMYM1Q5SVZ6 1142 aa21.77■■□□□ 1.08
SDC1-203ENST00000403076 KIAA0825Q8IV33 1275 aa21.77■■□□□ 1.08
SDC1-203ENST00000403076 TTF2Q9UNY4 1162 aaKnown RBP21.77■■□□□ 1.08
SDC1-203ENST00000403076 MYO3BQ8WXR4 1341 aa21.77■■□□□ 1.08
SDC1-203ENST00000403076 MYO5AQ9Y4I1 1855 aaKnown RBP21.77■■□□□ 1.08
SDC1-203ENST00000403076 LDHCP07864 332 aa21.76■■□□□ 1.07
SDC1-203ENST00000403076 SLF2Q8IX21 1173 aa21.76■■□□□ 1.07
SDC1-203ENST00000403076 APPBP2Q92624 585 aa21.76■■□□□ 1.07
SDC1-203ENST00000403076 GJA3Q9Y6H8 435 aa21.76■■□□□ 1.07
SDC1-203ENST00000403076 MAST3O60307 1309 aa21.76■■□□□ 1.07
SDC1-203ENST00000403076 A0A0D9SFI3 127 aa21.75■■□□□ 1.07
SDC1-203ENST00000403076 ESYT1Q9BSJ8 1104 aa21.75■■□□□ 1.07
SDC1-203ENST00000403076 HELLSQ9NRZ9 838 aa21.75■■□□□ 1.07
SDC1-203ENST00000403076 DIXDC1Q155Q3 683 aa21.75■■□□□ 1.07
SDC1-203ENST00000403076 MCMDC2Q4G0Z9 681 aa21.75■■□□□ 1.07
SDC1-203ENST00000403076 TMED8Q6PL24 325 aaPredicted RBP21.75■■□□□ 1.07
SDC1-203ENST00000403076 DOCK2Q92608 1830 aa21.75■■□□□ 1.07
SDC1-203ENST00000403076 SEC62Q99442 399 aaKnown RBP21.75■■□□□ 1.07
SDC1-203ENST00000403076 ZBTB12Q9Y330 459 aaPredicted RBP21.75■■□□□ 1.07
SDC1-203ENST00000403076 SBF1O95248 1867 aa21.74■■□□□ 1.07
SDC1-203ENST00000403076 TCRBV5S4A2TA0A5A2 114 aa21.74■■□□□ 1.07
SDC1-203ENST00000403076 SCNN1DP51172 638 aa21.74■■□□□ 1.07
SDC1-203ENST00000403076 AGBL3Q8NEM8 1001 aa21.74■■□□□ 1.07
SDC1-203ENST00000403076 OSBP2Q969R2 916 aa21.74■■□□□ 1.07
SDC1-203ENST00000403076 NOL10Q9BSC4 688 aaKnown RBP21.74■■□□□ 1.07
SDC1-203ENST00000403076 MYH7P12883 1935 aa21.73■■□□□ 1.07
SDC1-203ENST00000403076 EIF5BO60841 1220 aaKnown RBP21.73■■□□□ 1.07
SDC1-203ENST00000403076 MIGA1Q8NAN2 632 aa21.73■■□□□ 1.07
SDC1-203ENST00000403076 ZNF384Q8TF68 577 aa21.73■■□□□ 1.07
SDC1-203ENST00000403076 AIDAQ96BJ3 306 aa21.73■■□□□ 1.07
SDC1-203ENST00000403076 PUS7LQ9H0K6 701 aaKnown RBP21.73■■□□□ 1.07
SDC1-203ENST00000403076 HDAC9Q9UKV0 1011 aa21.73■■□□□ 1.07
SDC1-203ENST00000403076 RAD50Q92878 1312 aa21.72■■□□□ 1.07
SDC1-203ENST00000403076 ZNF541Q9H0D2 1346 aa21.72■■□□□ 1.07
SDC1-203ENST00000403076 M0R2C6 588 aa21.72■■□□□ 1.07
SDC1-203ENST00000403076 SGSM2O43147 1006 aa21.72■■□□□ 1.07
SDC1-203ENST00000403076 MFAP1P55081 439 aaKnown RBP21.72■■□□□ 1.07
SDC1-203ENST00000403076 KIAA1211Q6ZU35 1233 aa21.72■■□□□ 1.07
SDC1-203ENST00000403076 OGFOD1Q8N543 542 aa21.72■■□□□ 1.07
SDC1-203ENST00000403076 BACH2Q9BYV9 841 aa21.72■■□□□ 1.07
SDC1-203ENST00000403076 DICER1Q9UPY3 1922 aaKnown RBP21.72■■□□□ 1.07
SDC1-203ENST00000403076 RBM5P52756 815 aaKnown RBP eCLIP21.71■■□□□ 1.073e-7■■■■□ 25.8
SDC1-203ENST00000403076 CCDC129Q6ZRS4 1044 aa21.71■■□□□ 1.07
SDC1-203ENST00000403076 TEKT1Q969V4 418 aa21.71■■□□□ 1.07
SDC1-203ENST00000403076 MROH7-TTC4A0A0A0MT08 1334 aa21.71■■□□□ 1.07
SDC1-203ENST00000403076 PSME4Q14997 1843 aa21.71■■□□□ 1.07
SDC1-203ENST00000403076 MAGEB6P1A0A0J9YX57 407 aa21.7■■□□□ 1.07
SDC1-203ENST00000403076 RPS12P25398 132 aaKnown RBP21.7■■□□□ 1.07
SDC1-203ENST00000403076 ADGRA1Q86SQ6 560 aa21.7■■□□□ 1.07
SDC1-203ENST00000403076 GMLQ99445 158 aa21.7■■□□□ 1.07
SDC1-203ENST00000403076 GOLGB1Q14789 3259 aaKnown RBP21.7■■□□□ 1.06
SDC1-203ENST00000403076 REC8O95072 547 aa21.7■■□□□ 1.06
SDC1-203ENST00000403076 MBD4O95243 580 aa21.7■■□□□ 1.06
SDC1-203ENST00000403076 BAG3O95817 575 aa21.7■■□□□ 1.06
SDC1-203ENST00000403076 USP17L8P0C7I0 530 aa21.7■■□□□ 1.06
SDC1-203ENST00000403076 IL25Q9H293 177 aa21.7■■□□□ 1.06
SDC1-203ENST00000403076 AATFQ9NY61 560 aaKnown RBP eCLIP21.7■■□□□ 1.06
SDC1-203ENST00000403076 CCDC171Q6TFL3 1326 aa21.69■■□□□ 1.06
SDC1-203ENST00000403076 GPAA1O43292 621 aa21.69■■□□□ 1.06
SDC1-203ENST00000403076 CRKP46108 304 aa21.69■■□□□ 1.06
SDC1-203ENST00000403076 GMPSP49915 693 aaPredicted RBP21.69■■□□□ 1.06
SDC1-203ENST00000403076 DYNLL1P63167 89 aaKnown RBP21.69■■□□□ 1.06
SDC1-203ENST00000403076 HDLBPQ00341 1268 aaKnown RBP21.69■■□□□ 1.06
SDC1-203ENST00000403076 DPY19L2Q6NUT2 758 aa21.69■■□□□ 1.06
SDC1-203ENST00000403076 HHIPL2Q6UWX4 724 aa21.69■■□□□ 1.06
SDC1-203ENST00000403076 ZNF589Q86UQ0 364 aaPredicted RBP21.69■■□□□ 1.06
SDC1-203ENST00000403076 GPC2Q8N158 579 aa21.69■■□□□ 1.06
SDC1-203ENST00000403076 ARMT1Q9H993 441 aa21.69■■□□□ 1.06
SDC1-203ENST00000403076 ANO2Q9NQ90 1003 aa21.69■■□□□ 1.06
SDC1-203ENST00000403076 MAST2Q6P0Q8 1798 aa21.69■■□□□ 1.06
SDC1-203ENST00000403076 FAM163AQ96GL9 167 aaPredicted RBP21.68■■□□□ 1.06
SDC1-203ENST00000403076 MRIQ9BWK5 157 aa21.68■■□□□ 1.06
SDC1-203ENST00000403076 SERPINA10Q9UK55 444 aa21.68■■□□□ 1.06
SDC1-203ENST00000403076 DAGLAQ9Y4D2 1042 aa21.68■■□□□ 1.06
SDC1-203ENST00000403076 SEC24BO95487 1268 aa21.67■■□□□ 1.06
SDC1-203ENST00000403076 BTDP43251 543 aa21.67■■□□□ 1.06
SDC1-203ENST00000403076 DPF2Q92785 391 aa21.67■■□□□ 1.06
SDC1-203ENST00000403076 GAKO14976 1311 aa21.67■■□□□ 1.06
SDC1-203ENST00000403076 ZNF646O15015 1829 aaPredicted RBP21.66■■□□□ 1.06
SDC1-203ENST00000403076 MYH2Q9UKX2 1941 aa21.66■■□□□ 1.06
SDC1-203ENST00000403076 LCORLQ8N3X6 602 aa21.66■■□□□ 1.06
SDC1-203ENST00000403076 UPF2Q9HAU5 1272 aaKnown RBP21.66■■□□□ 1.06
SDC1-203ENST00000403076 GPR75-ASB3A0A0A6YYF3 556 aa21.65■■□□□ 1.06
SDC1-203ENST00000403076 DDNO94850 711 aaPredicted RBP21.65■■□□□ 1.06
SDC1-203ENST00000403076 CFAP100Q494V2 611 aa21.65■■□□□ 1.06
SDC1-203ENST00000403076 STRBPQ96SI9 672 aaKnown RBP21.65■■□□□ 1.06
SDC1-203ENST00000403076 RIOK1Q9BRS2 568 aaKnown RBP21.65■■□□□ 1.06
SDC1-203ENST00000403076 CNOT7Q9UIV1 285 aaKnown RBP21.65■■□□□ 1.06
SDC1-203ENST00000403076 TIAM2Q8IVF5 1701 aa21.65■■□□□ 1.06
SDC1-203ENST00000403076 ZC3H4Q9UPT8 1303 aaKnown RBP21.65■■□□□ 1.06
SDC1-203ENST00000403076 APPP05067 770 aa21.65■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms