RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 BRD1O95696 1058 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 TRIM47Q96LD4 638 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 PUF60Q9UHX1 559 aaKnown RBP12.31□□□□□ -0.44
CCDC40-204ENST00000397545 TOPAZ1Q8N9V7 1692 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 USO1O60763 962 aaKnown RBP12.31□□□□□ -0.44
CCDC40-204ENST00000397545 TXLNBQ8N3L3 684 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 CBX8Q9HC52 389 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 SHTN1A0MZ66 631 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 SLC27A2O14975 620 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 AKR1B10O60218 316 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 TMEM132AQ24JP5 1023 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 CCDC178Q5BJE1 867 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 CDC37L1Q7L3B6 337 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 ANKIB1Q9P2G1 1089 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 TRIM21P19474 475 aaKnown RBP12.31□□□□□ -0.44
CCDC40-204ENST00000397545 IL15P40933 162 aaPredicted RBP12.31□□□□□ -0.44
CCDC40-204ENST00000397545 SPECC1Q5M775 1068 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 CTR9Q6PD62 1173 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 SLAIN2Q9P270 581 aa12.31□□□□□ -0.44
CCDC40-204ENST00000397545 GOLGA6L9A6NEM1 432 aa12.3□□□□□ -0.44
CCDC40-204ENST00000397545 SSR1P43307 286 aaKnown RBP12.3□□□□□ -0.44
CCDC40-204ENST00000397545 RTN1Q16799 776 aa12.3□□□□□ -0.44
CCDC40-204ENST00000397545 RNF187Q5TA31 235 aaPredicted RBP12.3□□□□□ -0.44
CCDC40-204ENST00000397545 TCERG1LQ5VWI1 586 aa12.3□□□□□ -0.44
CCDC40-204ENST00000397545 NPHP4O75161 1426 aaPredicted RBP12.3□□□□□ -0.44
CCDC40-204ENST00000397545 GPT2Q8TD30 523 aa12.3□□□□□ -0.44
CCDC40-204ENST00000397545 TIGD1Q96MW7 591 aa12.3□□□□□ -0.44
CCDC40-204ENST00000397545 ANKRD62A6NC57 917 aa12.3□□□□□ -0.44
CCDC40-204ENST00000397545 TCP11L1Q9NUJ3 509 aa12.3□□□□□ -0.44
CCDC40-204ENST00000397545 TMCO5BA8MYB1 307 aa12.29□□□□□ -0.44
CCDC40-204ENST00000397545 EXOC5O00471 708 aa12.29□□□□□ -0.44
CCDC40-204ENST00000397545 TTF1Q15361 905 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-204ENST00000397545 ZKSCAN3Q9BRR0 538 aa12.29□□□□□ -0.44
CCDC40-204ENST00000397545 RAD50Q92878 1312 aa12.29□□□□□ -0.44
CCDC40-204ENST00000397545 ADGRL3Q9HAR2 1447 aa12.29□□□□□ -0.44
CCDC40-204ENST00000397545 RPS6KB1P23443 525 aa12.29□□□□□ -0.44
CCDC40-204ENST00000397545 NOP2P46087 812 aaKnown RBP12.29□□□□□ -0.44
CCDC40-204ENST00000397545 MIGA1Q8NAN2 632 aa12.29□□□□□ -0.44
CCDC40-204ENST00000397545 LEO1Q8WVC0 666 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-204ENST00000397545 SLC4A4Q9Y6R1 1079 aa12.29□□□□□ -0.44
CCDC40-204ENST00000397545 ZFYP08048 801 aaPredicted RBP12.29□□□□□ -0.44
CCDC40-204ENST00000397545 CYP7A1P22680 504 aa12.29□□□□□ -0.44
CCDC40-204ENST00000397545 BEND3Q5T5X7 828 aa12.29□□□□□ -0.44
CCDC40-204ENST00000397545 IPO4Q8TEX9 1081 aaKnown RBP12.29□□□□□ -0.44
CCDC40-204ENST00000397545 RHOXF2BP0C7M4 288 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 LRMPQ12912 555 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 CCDC96Q2M329 555 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 RHOXF2Q9BQY4 288 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 IBTKQ9P2D0 1353 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-204ENST00000397545 PRPF4BQ13523 1007 aaKnown RBP12.28□□□□□ -0.44
CCDC40-204ENST00000397545 CCDC40Q4G0X9 1142 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 KANK3Q6NY19 840 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 BABAM1Q9NWV8 329 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 RSPH14Q9UHP6 348 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 CTAGE15A4D2H0 777 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 RNF113AO15541 343 aaKnown RBP12.28□□□□□ -0.44
CCDC40-204ENST00000397545 GIGYF1O75420 1035 aaPredicted RBP12.28□□□□□ -0.44
CCDC40-204ENST00000397545 CTAGE8P0CG41 777 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 CTAGE6Q86UF2 777 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 CTAGE4Q8IX94 777 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 HSPA4P34932 840 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 FAM160A1Q05DH4 1040 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 IFFO1Q0D2I5 559 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 SEPT7Q16181 437 aaKnown RBP12.28□□□□□ -0.44
CCDC40-204ENST00000397545 MYRIPQ8NFW9 859 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 SSH3Q8TE77 659 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 PLIN2Q99541 437 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 GOPCQ9HD26 462 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.28□□□□□ -0.44
CCDC40-204ENST00000397545 BTG4Q9NY30 223 aa12.28□□□□□ -0.44
CCDC40-204ENST00000397545 USP8P40818 1118 aa12.27□□□□□ -0.44
CCDC40-204ENST00000397545 MACROD2A1Z1Q3 448 aa12.27□□□□□ -0.45
CCDC40-204ENST00000397545 TRIM75PA6NK02 468 aa12.27□□□□□ -0.45
CCDC40-204ENST00000397545 ME3Q16798 604 aa12.27□□□□□ -0.45
CCDC40-204ENST00000397545 DYDC1Q8WWB3 177 aa12.27□□□□□ -0.45
CCDC40-204ENST00000397545 ZNF594Q96JF6 807 aaPredicted RBP12.27□□□□□ -0.45
CCDC40-204ENST00000397545 TSG101Q99816 390 aa12.27□□□□□ -0.45
CCDC40-204ENST00000397545 DDX21Q9NR30 783 aaKnown RBP eCLIP12.27□□□□□ -0.45
CCDC40-204ENST00000397545 CAPZA3Q96KX2 299 aa12.27□□□□□ -0.45
CCDC40-204ENST00000397545 GUCA1BQ9UMX6 200 aa12.27□□□□□ -0.45
CCDC40-204ENST00000397545 CCDC175P0C221 793 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 ZNF75DP51815 510 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 PTH1RQ03431 593 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 ELF2Q15723 593 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 ZNF569Q5MCW4 686 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 FSD2A1L4K1 749 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 ATP2C2O75185 946 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 CAPN2P17655 700 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 OSBPL3Q9H4L5 887 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 KAT14Q9H8E8 782 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 ZNF652Q9Y2D9 606 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 IFIT1BQ5T764 474 aaKnown RBP12.26□□□□□ -0.45
CCDC40-204ENST00000397545 MAATS1Q7Z4T9 603 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 FAM89AQ96GI7 184 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 SUCLG2Q96I99 432 aa12.26□□□□□ -0.45
CCDC40-204ENST00000397545 SRRTQ9BXP5 876 aaKnown RBP12.26□□□□□ -0.45
CCDC40-204ENST00000397545 DNAJC21Q5F1R6 531 aaKnown RBP12.25□□□□□ -0.45
CCDC40-204ENST00000397545 CRACR2BQ8N4Y2 399 aaPredicted RBP12.25□□□□□ -0.45
CCDC40-204ENST00000397545 PPP1R9BQ96SB3 815 aa12.25□□□□□ -0.45
CCDC40-204ENST00000397545 NALCNQ8IZF0 1738 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms