RNA–Protein interactions for RNA: ENST00000393546.8

PDLIM7-204, Transcript of PDZ and LIM domain 7, humanhuman

TSL 3

Gene PDLIM7, Length 671 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM7-204ENST00000393546 COL1A1P02452 1464 aaPredicted RBP23.29■■□□□ 1.32
PDLIM7-204ENST00000393546 MYO1BO43795 1136 aa23.28■■□□□ 1.32
PDLIM7-204ENST00000393546 IFIT2P09913 472 aaKnown RBP23.28■■□□□ 1.32
PDLIM7-204ENST00000393546 CRKP46108 304 aa23.28■■□□□ 1.32
PDLIM7-204ENST00000393546 SPTY2D1Q68D10 685 aaPredicted RBP23.28■■□□□ 1.32
PDLIM7-204ENST00000393546 ZNF512BQ96KM6 892 aaPredicted RBP23.28■■□□□ 1.32
PDLIM7-204ENST00000393546 TLR7Q9NYK1 1049 aaKnown RBP23.28■■□□□ 1.32
PDLIM7-204ENST00000393546 PITPNM2Q9BZ72 1349 aa23.28■■□□□ 1.32
PDLIM7-204ENST00000393546 SPDYE2BA6NHP3 402 aa23.27■■□□□ 1.32
PDLIM7-204ENST00000393546 TRAF5O00463 557 aa23.27■■□□□ 1.32
PDLIM7-204ENST00000393546 SPDYE6P0CI01 402 aa23.27■■□□□ 1.32
PDLIM7-204ENST00000393546 TEKT1Q969V4 418 aa23.27■■□□□ 1.32
PDLIM7-204ENST00000393546 PRMT6Q96LA8 375 aaPredicted RBP23.27■■□□□ 1.32
PDLIM7-204ENST00000393546 ABCF2Q9UG63 623 aa23.27■■□□□ 1.32
PDLIM7-204ENST00000393546 MCAMP43121 646 aa23.26■■□□□ 1.31
PDLIM7-204ENST00000393546 PCDHAC2Q9Y5I4 1007 aa23.26■■□□□ 1.31
PDLIM7-204ENST00000393546 PRDX5P30044 214 aa23.25■■□□□ 1.31
PDLIM7-204ENST00000393546 FMR1Q06787 632 aaKnown RBP eCLIP23.25■■□□□ 1.31
PDLIM7-204ENST00000393546 TMEM88BA6NKF7 163 aa23.24■■□□□ 1.31
PDLIM7-204ENST00000393546 ADM5C9JUS6 153 aa23.24■■□□□ 1.31
PDLIM7-204ENST00000393546 HDAC1Q13547 482 aaPredicted RBP23.24■■□□□ 1.31
PDLIM7-204ENST00000393546 HHIPL2Q6UWX4 724 aa23.24■■□□□ 1.31
PDLIM7-204ENST00000393546 PI16Q6UXB8 463 aa23.24■■□□□ 1.31
PDLIM7-204ENST00000393546 ERICH6Q7L0X2 663 aa23.24■■□□□ 1.31
PDLIM7-204ENST00000393546 APOBEC3FQ8IUX4 373 aaKnown RBP23.24■■□□□ 1.31
PDLIM7-204ENST00000393546 SNRKQ9NRH2 765 aa23.24■■□□□ 1.31
PDLIM7-204ENST00000393546 SMARCA5O60264 1052 aaPredicted RBP23.23■■□□□ 1.31
PDLIM7-204ENST00000393546 IRX6P78412 446 aaPredicted RBP23.23■■□□□ 1.31
PDLIM7-204ENST00000393546 ZDHHC15Q96MV8 337 aa23.23■■□□□ 1.31
PDLIM7-204ENST00000393546 CREBZFQ9NS37 354 aa23.23■■□□□ 1.31
PDLIM7-204ENST00000393546 TBC1D9Q6ZT07 1266 aa23.22■■□□□ 1.31
PDLIM7-204ENST00000393546 DZIP1Q86YF9 867 aaKnown RBP23.22■■□□□ 1.31
PDLIM7-204ENST00000393546 SLF2Q8IX21 1173 aa23.22■■□□□ 1.31
PDLIM7-204ENST00000393546 RWDD1Q9H446 243 aaPredicted RBP23.22■■□□□ 1.31
PDLIM7-204ENST00000393546 CLRN2A0PK11 232 aa23.21■■□□□ 1.31
PDLIM7-204ENST00000393546 CELF2O95319 508 aaKnown RBP23.21■■□□□ 1.31
PDLIM7-204ENST00000393546 DLK2Q6UY11 383 aa23.21■■□□□ 1.31
PDLIM7-204ENST00000393546 TDRD3Q9H7E2 651 aaKnown RBP23.21■■□□□ 1.31
PDLIM7-204ENST00000393546 ZNF408Q9H9D4 720 aa23.21■■□□□ 1.31
PDLIM7-204ENST00000393546 VEZTQ9HBM0 779 aa23.21■■□□□ 1.31
PDLIM7-204ENST00000393546 LRP2BPQ9P2M1 347 aa23.21■■□□□ 1.31
PDLIM7-204ENST00000393546 SCAF8Q9UPN6 1271 aaKnown RBP23.21■■□□□ 1.31
PDLIM7-204ENST00000393546 TRPM7Q96QT4 1865 aa23.2■■□□□ 1.3
PDLIM7-204ENST00000393546 ZAP70P43403 619 aa23.2■■□□□ 1.3
PDLIM7-204ENST00000393546 HTRA3P83110 453 aa23.2■■□□□ 1.3
PDLIM7-204ENST00000393546 DIXDC1Q155Q3 683 aa23.2■■□□□ 1.3
PDLIM7-204ENST00000393546 CST9Q5W186 159 aa23.2■■□□□ 1.3
PDLIM7-204ENST00000393546 GCC1Q96CN9 775 aa23.2■■□□□ 1.3
PDLIM7-204ENST00000393546 RAI14Q9P0K7 980 aa23.2■■□□□ 1.3
PDLIM7-204ENST00000393546 ZNF70Q9UC06 446 aaPredicted RBP23.2■■□□□ 1.3
PDLIM7-204ENST00000393546 ZBTB47Q9UFB7 747 aaPredicted RBP23.2■■□□□ 1.3
PDLIM7-204ENST00000393546 CYP2E1P05181 493 aaPredicted RBP23.19■■□□□ 1.3
PDLIM7-204ENST00000393546 SPDYE2Q495Y8 402 aa23.19■■□□□ 1.3
PDLIM7-204ENST00000393546 APOBEC3HQ6NTF7 200 aaKnown RBP23.19■■□□□ 1.3
PDLIM7-204ENST00000393546 CDCA5Q96FF9 252 aa23.19■■□□□ 1.3
PDLIM7-204ENST00000393546 AKAP11Q9UKA4 1901 aa23.19■■□□□ 1.3
PDLIM7-204ENST00000393546 AOX1Q06278 1338 aa23.18■■□□□ 1.3
PDLIM7-204ENST00000393546 ECM29Q5VYK3 1845 aa23.18■■□□□ 1.3
PDLIM7-204ENST00000393546 LDHCP07864 332 aa23.18■■□□□ 1.3
PDLIM7-204ENST00000393546 GSTO1P78417 241 aa23.18■■□□□ 1.3
PDLIM7-204ENST00000393546 MECOMQ03112 1051 aa23.18■■□□□ 1.3
PDLIM7-204ENST00000393546 PPIL4Q8WUA2 492 aaKnown RBP eCLIP23.18■■□□□ 1.3
PDLIM7-204ENST00000393546 DEFB129Q9H1M3 183 aa23.18■■□□□ 1.3
PDLIM7-204ENST00000393546 DAGLAQ9Y4D2 1042 aa23.18■■□□□ 1.3
PDLIM7-204ENST00000393546 TNFAIP1Q13829 316 aa23.17■■□□□ 1.3
PDLIM7-204ENST00000393546 FAM163AQ96GL9 167 aaPredicted RBP23.17■■□□□ 1.3
PDLIM7-204ENST00000393546 TMOD2Q9NZR1 351 aa23.17■■□□□ 1.3
PDLIM7-204ENST00000393546 ABT1Q9ULW3 272 aaKnown RBP23.17■■□□□ 1.3
PDLIM7-204ENST00000393546 IGSF3O75054 1194 aa23.16■■□□□ 1.3
PDLIM7-204ENST00000393546 ANKRD45Q5TZF3 282 aa23.16■■□□□ 1.3
PDLIM7-204ENST00000393546 PRAMEF18Q5VWM3 479 aa23.16■■□□□ 1.3
PDLIM7-204ENST00000393546 NSUN4Q96CB9 384 aaKnown RBP23.16■■□□□ 1.3
PDLIM7-204ENST00000393546 PPP2R3BQ9Y5P8 575 aa23.16■■□□□ 1.3
PDLIM7-204ENST00000393546 ATP5JP18859 108 aa23.15■■□□□ 1.3
PDLIM7-204ENST00000393546 NF2P35240 595 aa23.15■■□□□ 1.3
PDLIM7-204ENST00000393546 TNNI2P48788 182 aa23.15■■□□□ 1.3
PDLIM7-204ENST00000393546 C2orf69Q8N8R5 385 aa23.15■■□□□ 1.3
PDLIM7-204ENST00000393546 GPATCH3Q96I76 525 aa23.15■■□□□ 1.3
PDLIM7-204ENST00000393546 MYH2Q9UKX2 1941 aa23.15■■□□□ 1.3
PDLIM7-204ENST00000393546 GAKO14976 1311 aa23.14■■□□□ 1.3
PDLIM7-204ENST00000393546 TCP10L2B9ZVM9 353 aa23.14■■□□□ 1.29
PDLIM7-204ENST00000393546 RASA3Q14644 834 aa23.14■■□□□ 1.29
PDLIM7-204ENST00000393546 TTF1Q15361 905 aaPredicted RBP23.14■■□□□ 1.29
PDLIM7-204ENST00000393546 IFFO2Q5TF58 517 aa23.14■■□□□ 1.29
PDLIM7-204ENST00000393546 BOLA2Q9H3K6 86 aa23.14■■□□□ 1.29
PDLIM7-204ENST00000393546 GBA2Q9HCG7 927 aaPredicted RBP23.14■■□□□ 1.29
PDLIM7-204ENST00000393546 PIH1D3Q9NQM4 214 aaKnown RBP23.14■■□□□ 1.29
PDLIM7-204ENST00000393546 USP40Q9NVE5 1235 aa23.14■■□□□ 1.29
PDLIM7-204ENST00000393546 NDUFB9Q9Y6M9 179 aa23.14■■□□□ 1.29
PDLIM7-204ENST00000393546 MROH7-TTC4A0A0A0MT08 1334 aa23.13■■□□□ 1.29
PDLIM7-204ENST00000393546 IGHDP01880 384 aa23.13■■□□□ 1.29
PDLIM7-204ENST00000393546 FKBP1CQ5VVH2 108 aa23.13■■□□□ 1.29
PDLIM7-204ENST00000393546 CDC42EP5Q6NZY7 148 aa23.13■■□□□ 1.29
PDLIM7-204ENST00000393546 ECHDC1Q9NTX5 307 aa23.13■■□□□ 1.29
PDLIM7-204ENST00000393546 TLL2Q9Y6L7 1015 aa23.13■■□□□ 1.29
PDLIM7-204ENST00000393546 IDH1O75874 414 aaKnown RBP23.12■■□□□ 1.29
PDLIM7-204ENST00000393546 DEFB115Q30KQ5 88 aa23.12■■□□□ 1.29
PDLIM7-204ENST00000393546 SUPT20HL1Q3ZLR7 823 aa23.12■■□□□ 1.29
PDLIM7-204ENST00000393546 NAA16Q6N069 864 aaPredicted RBP23.12■■□□□ 1.29
PDLIM7-204ENST00000393546 DNAJC5GQ8N7S2 189 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms