RNA–Protein interactions for RNA: ENST00000368439.5

CKS1B-203, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 1 (best) BASIC

Gene CKS1B, Length 912 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-203ENST00000368439 MYO1BO43795 1136 aa23.47■■□□□ 1.35
CKS1B-203ENST00000368439 WDR66Q8TBY9 1149 aa23.47■■□□□ 1.35
CKS1B-203ENST00000368439 ZNF70Q9UC06 446 aaPredicted RBP23.47■■□□□ 1.35
CKS1B-203ENST00000368439 AKAP2Q9Y2D5 859 aa23.47■■□□□ 1.35
CKS1B-203ENST00000368439 SSC5DA1L4H1 1573 aa23.47■■□□□ 1.35
CKS1B-203ENST00000368439 SEMA3EO15041 775 aa23.46■■□□□ 1.35
CKS1B-203ENST00000368439 MS4A1P11836 297 aa23.46■■□□□ 1.35
CKS1B-203ENST00000368439 G3BP1Q13283 466 aaKnown RBP eCLIP23.46■■□□□ 1.35
CKS1B-203ENST00000368439 XAGE2Q96GT9 111 aa23.46■■□□□ 1.35
CKS1B-203ENST00000368439 TDRD3Q9H7E2 651 aaKnown RBP23.46■■□□□ 1.35
CKS1B-203ENST00000368439 GNL3LQ9NVN8 582 aaKnown RBP23.46■■□□□ 1.35
CKS1B-203ENST00000368439 PPP2R3BQ9Y5P8 575 aa23.46■■□□□ 1.35
CKS1B-203ENST00000368439 SALL1Q9NSC2 1324 aa23.45■■□□□ 1.34
CKS1B-203ENST00000368439 COL13A1Q5TAT6 717 aaPredicted RBP23.45■■□□□ 1.34
CKS1B-203ENST00000368439 CEP85Q6P2H3 762 aa23.45■■□□□ 1.34
CKS1B-203ENST00000368439 DENND2AQ9ULE3 1009 aa23.45■■□□□ 1.34
CKS1B-203ENST00000368439 NOP58Q9Y2X3 529 aaKnown RBP23.45■■□□□ 1.34
CKS1B-203ENST00000368439 SLC10A3P09131 477 aa23.44■■□□□ 1.34
CKS1B-203ENST00000368439 ZNF157P51786 506 aaPredicted RBP23.44■■□□□ 1.34
CKS1B-203ENST00000368439 NOGQ13253 232 aa23.44■■□□□ 1.34
CKS1B-203ENST00000368439 MVPQ14764 893 aaKnown RBP23.44■■□□□ 1.34
CKS1B-203ENST00000368439 TEKT1Q969V4 418 aa23.44■■□□□ 1.34
CKS1B-203ENST00000368439 CCDC102AQ96A19 550 aa23.44■■□□□ 1.34
CKS1B-203ENST00000368439 ZDHHC15Q96MV8 337 aa23.44■■□□□ 1.34
CKS1B-203ENST00000368439 VEZTQ9HBM0 779 aa23.44■■□□□ 1.34
CKS1B-203ENST00000368439 MAST3O60307 1309 aa23.43■■□□□ 1.34
CKS1B-203ENST00000368439 UBE2Q2LH0YL09 131 aa23.43■■□□□ 1.34
CKS1B-203ENST00000368439 NF2P35240 595 aa23.43■■□□□ 1.34
CKS1B-203ENST00000368439 RASGRF1Q13972 1273 aa23.43■■□□□ 1.34
CKS1B-203ENST00000368439 HHIPL2Q6UWX4 724 aa23.43■■□□□ 1.34
CKS1B-203ENST00000368439 PDS5AQ29RF7 1337 aaKnown RBP23.42■■□□□ 1.34
CKS1B-203ENST00000368439 PRDX5P30044 214 aa23.42■■□□□ 1.34
CKS1B-203ENST00000368439 RASA3Q14644 834 aa23.42■■□□□ 1.34
CKS1B-203ENST00000368439 APOBEC3HQ6NTF7 200 aaKnown RBP23.42■■□□□ 1.34
CKS1B-203ENST00000368439 RASAL3Q86YV0 1011 aa23.42■■□□□ 1.34
CKS1B-203ENST00000368439 AIDAQ96BJ3 306 aa23.42■■□□□ 1.34
CKS1B-203ENST00000368439 COG6Q9Y2V7 657 aa23.42■■□□□ 1.34
CKS1B-203ENST00000368439 SURF6O75683 361 aaKnown RBP23.41■■□□□ 1.34
CKS1B-203ENST00000368439 CTCFP49711 727 aaPredicted RBP23.41■■□□□ 1.34
CKS1B-203ENST00000368439 NEUROD6Q96NK8 337 aa23.41■■□□□ 1.34
CKS1B-203ENST00000368439 GPR108Q9NPR9 543 aa23.41■■□□□ 1.34
CKS1B-203ENST00000368439 FZD1Q9UP38 647 aa23.41■■□□□ 1.34
CKS1B-203ENST00000368439 MYH2Q9UKX2 1941 aa23.4■■□□□ 1.34
CKS1B-203ENST00000368439 HSPA8P11142 646 aaKnown RBP23.4■■□□□ 1.34
CKS1B-203ENST00000368439 MAP3K11Q16584 847 aa23.4■■□□□ 1.34
CKS1B-203ENST00000368439 LDLRAD1Q5T700 205 aa23.4■■□□□ 1.34
CKS1B-203ENST00000368439 NBPF12Q5TAG4 269 aaPredicted RBP23.4■■□□□ 1.34
CKS1B-203ENST00000368439 TEPSINQ96N21 525 aa23.4■■□□□ 1.34
CKS1B-203ENST00000368439 ZBTB40Q9NUA8 1239 aa23.4■■□□□ 1.34
CKS1B-203ENST00000368439 DDX19BQ9UMR2 479 aa23.4■■□□□ 1.34
CKS1B-203ENST00000368439 KIF23Q02241 960 aaPredicted RBP23.39■■□□□ 1.33
CKS1B-203ENST00000368439 TNFAIP1Q13829 316 aa23.39■■□□□ 1.33
CKS1B-203ENST00000368439 PRKG1Q13976 671 aa23.39■■□□□ 1.33
CKS1B-203ENST00000368439 TTLL12Q14166 644 aaPredicted RBP23.39■■□□□ 1.33
CKS1B-203ENST00000368439 TNNI3KQ59H18 835 aa23.39■■□□□ 1.33
CKS1B-203ENST00000368439 C20orf194Q5TEA3 1177 aa23.39■■□□□ 1.33
CKS1B-203ENST00000368439 FPGT-TNNI3KV9GXZ4 949 aa23.39■■□□□ 1.33
CKS1B-203ENST00000368439 AKAP11Q9UKA4 1901 aa23.39■■□□□ 1.33
CKS1B-203ENST00000368439 TCP10L2B9ZVM9 353 aa23.38■■□□□ 1.33
CKS1B-203ENST00000368439 LDHBP07195 334 aaKnown RBP23.38■■□□□ 1.33
CKS1B-203ENST00000368439 ARID4AP29374 1257 aaPredicted RBP23.38■■□□□ 1.33
CKS1B-203ENST00000368439 DIXDC1Q155Q3 683 aa23.38■■□□□ 1.33
CKS1B-203ENST00000368439 ARMC9Q7Z3E5 817 aa23.38■■□□□ 1.33
CKS1B-203ENST00000368439 CDAN1Q8IWY9 1227 aa23.38■■□□□ 1.33
CKS1B-203ENST00000368439 DAGLAQ9Y4D2 1042 aa23.38■■□□□ 1.33
CKS1B-203ENST00000368439 CACNB3P54284 484 aa23.37■■□□□ 1.33
CKS1B-203ENST00000368439 PDE3AQ14432 1141 aa23.37■■□□□ 1.33
CKS1B-203ENST00000368439 SUPT20HL1Q3ZLR7 823 aa23.37■■□□□ 1.33
CKS1B-203ENST00000368439 PRDM10Q9NQV6 1147 aa23.37■■□□□ 1.33
CKS1B-203ENST00000368439 HMG20BQ9P0W2 317 aa23.37■■□□□ 1.33
CKS1B-203ENST00000368439 ANGEL1Q9UNK9 670 aaKnown RBP23.37■■□□□ 1.33
CKS1B-203ENST00000368439 OTOFQ9HC10 1997 aa23.37■■□□□ 1.33
CKS1B-203ENST00000368439 LBX1P52954 281 aa23.36■■□□□ 1.33
CKS1B-203ENST00000368439 OS9Q13438 667 aaPredicted RBP23.36■■□□□ 1.33
CKS1B-203ENST00000368439 TMEM39BQ9GZU3 492 aa23.36■■□□□ 1.33
CKS1B-203ENST00000368439 LAMB1P07942 1786 aa23.35■■□□□ 1.33
CKS1B-203ENST00000368439 USP2O75604 605 aaPredicted RBP23.35■■□□□ 1.33
CKS1B-203ENST00000368439 FKBP1CQ5VVH2 108 aa23.35■■□□□ 1.33
CKS1B-203ENST00000368439 PI16Q6UXB8 463 aa23.35■■□□□ 1.33
CKS1B-203ENST00000368439 SIRT2Q8IXJ6 389 aa23.35■■□□□ 1.33
CKS1B-203ENST00000368439 ZGPATQ8N5A5 531 aaKnown RBP23.35■■□□□ 1.33
CKS1B-203ENST00000368439 CSRNP1Q96S65 589 aa23.35■■□□□ 1.33
CKS1B-203ENST00000368439 DBNDD2Q9BQY9 259 aa23.35■■□□□ 1.33
CKS1B-203ENST00000368439 BEGAINQ9BUH8 593 aa23.35■■□□□ 1.33
CKS1B-203ENST00000368439 MCAMP43121 646 aa23.34■■□□□ 1.33
CKS1B-203ENST00000368439 TNNI2P48788 182 aa23.34■■□□□ 1.33
CKS1B-203ENST00000368439 GORABQ5T7V8 394 aa23.34■■□□□ 1.33
CKS1B-203ENST00000368439 RPAP2Q8IXW5 612 aaPredicted RBP23.34■■□□□ 1.33
CKS1B-203ENST00000368439 SPATA5Q8NB90 893 aa23.34■■□□□ 1.33
CKS1B-203ENST00000368439 GAKO14976 1311 aa23.33■■□□□ 1.33
CKS1B-203ENST00000368439 PPP1R12BO60237 982 aaPredicted RBP23.33■■□□□ 1.33
CKS1B-203ENST00000368439 CDC42EP5Q6NZY7 148 aa23.33■■□□□ 1.33
CKS1B-203ENST00000368439 FAM83AQ86UY5 434 aa23.33■■□□□ 1.33
CKS1B-203ENST00000368439 ZNF384Q8TF68 577 aa23.33■■□□□ 1.33
CKS1B-203ENST00000368439 ABCF2Q9UG63 623 aa23.33■■□□□ 1.33
CKS1B-203ENST00000368439 EXOC6BQ9Y2D4 811 aa23.33■■□□□ 1.33
CKS1B-203ENST00000368439 CA12O43570 354 aa23.32■■□□□ 1.32
CKS1B-203ENST00000368439 UQCRFS1P1P0C7P4 283 aa23.32■■□□□ 1.32
CKS1B-203ENST00000368439 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.32■■□□□ 1.32
CKS1B-203ENST00000368439 EAF2Q96CJ1 260 aaPredicted RBP23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms