RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 ELP1O95163 1332 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 ZNF569Q5MCW4 686 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 AFAP1Q8N556 730 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 GBP7Q8N8V2 638 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 HAUS7Q99871 368 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 WDR70Q9NW82 654 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 VPS52Q8N1B4 723 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 UTP11Q9Y3A2 253 aaKnown RBP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 ERCC3P19447 782 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 ZNF445P59923 1031 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 KARSQ15046 597 aaKnown RBP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 SH2D4BQ5SQS7 431 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 KRBA2Q6ZNG9 492 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 TTF2Q9UNY4 1162 aaKnown RBP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 PPP2R3AQ06190 1150 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 FRMD4BQ9Y2L6 1034 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 AOX1Q06278 1338 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 STK10O94804 968 aaKnown RBP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 LDHCP07864 332 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 ANKLE2Q86XL3 938 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 ZGPATQ8N5A5 531 aaKnown RBP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 UBL4BQ8N7F7 174 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 SETD1BQ9UPS6 1966 aaKnown RBP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 PIK3C2GO75747 1445 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 VIMP08670 466 aaKnown RBP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 SDSP20132 328 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 C8orf34Q49A92 452 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 ANKRD44Q8N8A2 993 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 KIFC2Q96AC6 838 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 ZNF219Q9P2Y4 722 aaPredicted RBP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 SPTLC2O15270 562 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 PPFIA1Q13136 1202 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 PLS1Q14651 629 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 ARHGAP24Q8N264 748 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 NUDT16Q96DE0 195 aaKnown RBP8.2□□□□□ -1.1
SYNE1-208ENST00000367256 ABCA10Q8WWZ4 1543 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 AGTPBP1Q9UPW5 1226 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 SPDYE3A6NKU9 549 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 ZNF853P0CG23 659 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 RRP36Q96EU6 259 aaKnown RBP8.19□□□□□ -1.1
SYNE1-208ENST00000367256 PPP1R9BQ96SB3 815 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 CSRNP2Q9H175 543 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 ARID4AP29374 1257 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-208ENST00000367256 Q6ZUG5 572 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 CCDC26Q8TAB7 109 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 DACT1Q9NYF0 836 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 LMOD1P29536 600 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-208ENST00000367256 INPP5BP32019 993 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 VWA3BQ502W6 1294 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 KIFAP3Q92845 792 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 SNRKQ9NRH2 765 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 KRT5P13647 590 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 ITIH3Q06033 890 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 CCDC122Q5T0U0 273 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 SKAP1Q86WV1 359 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 ZBTB9Q96C00 473 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 DHX58Q96C10 678 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 STMN1P16949 149 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 ZC3H6P61129 1189 aaKnown RBP8.19□□□□□ -1.1
SYNE1-208ENST00000367256 RUFY4Q6ZNE9 571 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 CCDC117Q8IWD4 279 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-208ENST00000367256 PROCA1Q8NCQ7 364 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-208ENST00000367256 ZMYM4Q5VZL5 1548 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 TAF12Q16514 161 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 PPP1R42Q7Z4L9 355 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 GPTP24298 496 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 MAP7Q14244 749 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 CCDC152Q4G0S7 254 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 DCAF17Q5H9S7 520 aaPredicted RBP8.19□□□□□ -1.1
SYNE1-208ENST00000367256 ZNF804AQ7Z570 1209 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 FAM212AQ96EL1 285 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 ZFYVE9O95405 1425 aa8.19□□□□□ -1.1
SYNE1-208ENST00000367256 MCM7P33993 719 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 ZNF131P52739 623 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 PDE1AP54750 535 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 TRPC3Q13507 836 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 LRRC2Q9BYS8 371 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 TSKSQ9UJT2 592 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 TRIM75PA6NK02 468 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 ERCC5P28715 1186 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 NBPF6Q5VWK0 638 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 PHLDB2Q86SQ0 1253 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 NBPF5PQ86XG9 351 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 VTI1AQ96AJ9 217 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 NBPF4Q96M43 638 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 SLC4A4Q9Y6R1 1079 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 SYNRGQ9UMZ2 1314 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 RILPL1Q5EBL4 403 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 NECAB1Q8N987 351 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 UQCRFS1P1P0C7P4 283 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 TAOK1Q7L7X3 1001 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 BRF1Q92994 677 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 TEX13AQ9BXU3 409 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 RAPGEF1Q13905 1077 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 POLR3AO14802 1390 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 TLDC2A0PJX2 215 aa8.18□□□□□ -1.1
SYNE1-208ENST00000367256 AKR1B15C9JRZ8 316 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 RFC1P35251 1148 aaPredicted RBP8.18□□□□□ -1.1
SYNE1-208ENST00000367256 DNM1Q05193 864 aaKnown RBP8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms