RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 TCP10L2B9ZVM9 353 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 CTNNBL1Q8WYA6 563 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-204ENST00000367248 ESPNB1AK53 854 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 PRKCSHP14314 528 aaPredicted RBP13.23□□□□□ -0.29
SYNE1-204ENST00000367248 RUFY3Q7L099 469 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 NDUFB9Q9Y6M9 179 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 ABCC4O15439 1325 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 TAF12Q16514 161 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 SSH3Q8TE77 659 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 ATP7BP35670 1465 aa13.23□□□□□ -0.29
SYNE1-204ENST00000367248 GPAA1O43292 621 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 PHACTR2O75167 634 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 PCCAP05165 728 aaPredicted RBP13.22□□□□□ -0.29
SYNE1-204ENST00000367248 CERS3Q8IU89 383 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 GNA11P29992 359 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 ZBTB7AO95365 584 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 PLA2R1Q13018 1463 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 B4DLN1 442 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 SGSM2O43147 1006 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 ZSCAN12O43309 604 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 HARSP12081 509 aaKnown RBP13.22□□□□□ -0.29
SYNE1-204ENST00000367248 MYCLP12524 364 aaPredicted RBP13.22□□□□□ -0.29
SYNE1-204ENST00000367248 MRPL12P52815 198 aaKnown RBP13.22□□□□□ -0.29
SYNE1-204ENST00000367248 SEPT7Q16181 437 aaKnown RBP13.22□□□□□ -0.29
SYNE1-204ENST00000367248 BEND3Q5T5X7 828 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 RMND1Q9NWS8 449 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 CLIP2Q9UDT6 1046 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 SPATA5Q8NB90 893 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 DNAJC5Q9H3Z4 198 aa13.22□□□□□ -0.29
SYNE1-204ENST00000367248 CSPG5O95196 566 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 YEATS4O95619 227 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 CETN2P41208 172 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 MAPKAPK5Q8IW41 473 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 TBC1D22AQ8WUA7 517 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 TMEM87BQ96K49 555 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 IRX3P78415 501 aaPredicted RBP13.21□□□□□ -0.29
SYNE1-204ENST00000367248 TDRD12Q587J7 1177 aaKnown RBP13.21□□□□□ -0.29
SYNE1-204ENST00000367248 CCDC174Q6PII3 467 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 CNPY2Q9Y2B0 182 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 KIF24Q5T7B8 1368 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 B4E1Z4 1266 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 SPTLC2O15270 562 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 SORBS3O60504 671 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 RFX1P22670 979 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 BRINP3Q76B58 766 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 ASAP1Q9ULH1 1129 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 KDRP35968 1356 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 CHMP2AO43633 222 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 ZAP70P43403 619 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 FAM114A1Q8IWE2 563 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 DCPSQ96C86 337 aaKnown RBP13.21□□□□□ -0.29
SYNE1-204ENST00000367248 INTS4Q96HW7 963 aaKnown RBP13.21□□□□□ -0.29
SYNE1-204ENST00000367248 PLIN2Q99541 437 aa13.21□□□□□ -0.29
SYNE1-204ENST00000367248 ABT1Q9ULW3 272 aaKnown RBP13.21□□□□□ -0.29
SYNE1-204ENST00000367248 ERCC6L2Q5T890 1561 aa13.21□□□□□ -0.3
SYNE1-204ENST00000367248 CPA1P15085 419 aa13.21□□□□□ -0.3
SYNE1-204ENST00000367248 MARCKSP29966 332 aaPredicted RBP13.21□□□□□ -0.3
SYNE1-204ENST00000367248 ZSCAN30Q86W11 494 aa13.21□□□□□ -0.3
SYNE1-204ENST00000367248 NLGN1Q8N2Q7 840 aa13.21□□□□□ -0.3
SYNE1-204ENST00000367248 PLEKHF1Q96S99 279 aa13.21□□□□□ -0.3
SYNE1-204ENST00000367248 CSADQ9Y600 493 aa13.21□□□□□ -0.3
SYNE1-204ENST00000367248 KIF2AO00139 706 aaPredicted RBP13.2□□□□□ -0.3
SYNE1-204ENST00000367248 IQCEQ6IPM2 695 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 EXOC1Q9NV70 894 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 PARP1P09874 1014 aaKnown RBP13.2□□□□□ -0.3
SYNE1-204ENST00000367248 AFMP43652 599 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 CTSWP56202 376 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 KRT79Q5XKE5 535 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 TAX1BP1Q86VP1 789 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 ERLIN1O75477 346 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 NCBP1Q09161 790 aaKnown RBP13.2□□□□□ -0.3
SYNE1-204ENST00000367248 SULF1Q8IWU6 871 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 TRIM47Q96LD4 638 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 FAM227BQ96M60 508 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 NUP88Q99567 741 aaPredicted RBP13.2□□□□□ -0.3
SYNE1-204ENST00000367248 TTF2Q9UNY4 1162 aaKnown RBP13.2□□□□□ -0.3
SYNE1-204ENST00000367248 ZBTB1Q9Y2K1 713 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 ZMYM4Q5VZL5 1548 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 ATP5JP18859 108 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 NSMFQ6X4W1 530 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 ZNF771Q7L3S4 317 aaPredicted RBP13.2□□□□□ -0.3
SYNE1-204ENST00000367248 STAT6P42226 847 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 DNM1Q05193 864 aaKnown RBP13.2□□□□□ -0.3
SYNE1-204ENST00000367248 RRAGBQ5VZM2 374 aa13.2□□□□□ -0.3
SYNE1-204ENST00000367248 GIGYF2Q6Y7W6 1299 aaKnown RBP13.2□□□□□ -0.3
SYNE1-204ENST00000367248 RBM28Q9NW13 759 aaKnown RBP13.2□□□□□ -0.3
SYNE1-204ENST00000367248 IL6STP40189 918 aaPredicted RBP13.19□□□□□ -0.3
SYNE1-204ENST00000367248 USH1GQ495M9 461 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 GADL1Q6ZQY3 521 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 MAP3K15Q6ZN16 1313 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 DDX39AO00148 427 aaKnown RBP13.19□□□□□ -0.3
SYNE1-204ENST00000367248 TAF3Q5VWG9 929 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 TGFBRAP1Q8WUH2 860 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 FAM47CQ5HY64 1035 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 JAKMIP3Q5VZ66 844 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 ZBTB38Q8NAP3 1195 aaPredicted RBP13.19□□□□□ -0.3
SYNE1-204ENST00000367248 DACT1Q9NYF0 836 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 CRKLP46109 303 aaKnown RBP13.19□□□□□ -0.3
SYNE1-204ENST00000367248 HSP90AA4PQ58FG1 418 aa13.19□□□□□ -0.3
SYNE1-204ENST00000367248 BRAPQ7Z569 592 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms