RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 METAP2P50579 478 aaKnown RBP eCLIP10.97□□□□□ -0.65
CHD3-202ENST00000358181 ZBTB41Q5SVQ8 909 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 WDR66Q8TBY9 1149 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 EIF6P56537 245 aaKnown RBP10.97□□□□□ -0.65
CHD3-202ENST00000358181 BRD3Q15059 726 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 NAA16Q6N069 864 aaPredicted RBP10.97□□□□□ -0.65
CHD3-202ENST00000358181 CEP57Q86XR8 500 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 IFT74Q96LB3 600 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 TXNDC9O14530 226 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 CYP7A1P22680 504 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 ALDH3A1P30838 453 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 TNNI2P48788 182 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 CD2APQ9Y5K6 639 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 STX10O60499 249 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 STK10O94804 968 aaKnown RBP10.97□□□□□ -0.65
CHD3-202ENST00000358181 SAT1P21673 171 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 ASIC1P78348 528 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 PDE3AQ14432 1141 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 AMOTQ4VCS5 1084 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 WDR44Q5JSH3 913 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 UTP14CQ5TAP6 766 aaKnown RBP10.97□□□□□ -0.65
CHD3-202ENST00000358181 HINFPQ9BQA5 517 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 LMCD1Q9NZU5 365 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 SLC4A4Q9Y6R1 1079 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 PRPHP41219 470 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 RBBP5Q15291 538 aaKnown RBP10.97□□□□□ -0.65
CHD3-202ENST00000358181 METTL13Q8N6R0 699 aa10.97□□□□□ -0.65
CHD3-202ENST00000358181 C16orf45Q96MC5 204 aaPredicted RBP10.97□□□□□ -0.65
CHD3-202ENST00000358181 MRPL46Q9H2W6 279 aaKnown RBP10.97□□□□□ -0.65
CHD3-202ENST00000358181 XPAP23025 273 aaPredicted RBP10.96□□□□□ -0.65
CHD3-202ENST00000358181 CCDC157Q569K6 752 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 UBLCP1Q8WVY7 318 aaPredicted RBP10.96□□□□□ -0.65
CHD3-202ENST00000358181 SYNJ2BP-COX16A0A087WUM0 186 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 NXNQ6DKJ4 435 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 KCNH5Q8NCM2 988 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 SMCR8Q8TEV9 937 aaPredicted RBP10.96□□□□□ -0.65
CHD3-202ENST00000358181 TRIM56Q9BRZ2 755 aaKnown RBP10.96□□□□□ -0.65
CHD3-202ENST00000358181 COX16Q9P0S2 106 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 ANKRD30BQ9BXX2 1392 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 POGZQ7Z3K3 1410 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 MX1P20591 662 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 SLFN5Q08AF3 891 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 SLC12A1Q13621 1099 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 TBCCQ15814 346 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.96□□□□□ -0.65
CHD3-202ENST00000358181 LDHAL6AQ6ZMR3 332 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 MICAL1Q8TDZ2 1067 aa10.96□□□□□ -0.65
CHD3-202ENST00000358181 LEO1Q8WVC0 666 aaPredicted RBP10.96□□□□□ -0.65
CHD3-202ENST00000358181 MGEA5O60502 916 aa10.96□□□□□ -0.66
CHD3-202ENST00000358181 STMN2Q93045 179 aa10.96□□□□□ -0.66
CHD3-202ENST00000358181 EPRSP07814 1512 aaKnown RBP10.96□□□□□ -0.66
CHD3-202ENST00000358181 N4BP3O15049 544 aa10.96□□□□□ -0.66
CHD3-202ENST00000358181 HSPA2P54652 639 aa10.96□□□□□ -0.66
CHD3-202ENST00000358181 ZNF804AQ7Z570 1209 aa10.96□□□□□ -0.66
CHD3-202ENST00000358181 CXorf38Q8TB03 319 aa10.96□□□□□ -0.66
CHD3-202ENST00000358181 PCF11O94913 1555 aaKnown RBP10.96□□□□□ -0.66
CHD3-202ENST00000358181 CLUL1Q15846 466 aa10.96□□□□□ -0.66
CHD3-202ENST00000358181 ZCRB1Q8TBF4 217 aaKnown RBP10.96□□□□□ -0.66
CHD3-202ENST00000358181 N4BP2L2Q92802 583 aaPredicted RBP10.96□□□□□ -0.66
CHD3-202ENST00000358181 LRRC27Q9C0I9 530 aa10.96□□□□□ -0.66
CHD3-202ENST00000358181 USP16Q9Y5T5 823 aa10.96□□□□□ -0.66
CHD3-202ENST00000358181 LRRC2Q9BYS8 371 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 ARPP19P56211 112 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 STRN3Q13033 797 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 GPIHBP1Q8IV16 184 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 ZNF654Q8IZM8 581 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 ANKRD24Q8TF21 1146 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 ALKBH8Q96BT7 664 aaKnown RBP10.95□□□□□ -0.66
CHD3-202ENST00000358181 NFKBIL1Q9UBC1 381 aaPredicted RBP10.95□□□□□ -0.66
CHD3-202ENST00000358181 IARSP41252 1262 aaKnown RBP10.95□□□□□ -0.66
CHD3-202ENST00000358181 NOP14P78316 857 aaKnown RBP10.95□□□□□ -0.66
CHD3-202ENST00000358181 KANK3Q6NY19 840 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 ANKS4BQ8N8V4 417 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 LRRC59Q96AG4 307 aaKnown RBP10.95□□□□□ -0.66
CHD3-202ENST00000358181 TFIP11Q9UBB9 837 aaKnown RBP10.95□□□□□ -0.66
CHD3-202ENST00000358181 NCAPD3P42695 1498 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 KIF18AQ8NI77 898 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 RMDN2Q96LZ7 410 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 PRDM5Q9NQX1 630 aaPredicted RBP10.95□□□□□ -0.66
CHD3-202ENST00000358181 TTC31Q49AM3 519 aaPredicted RBP10.95□□□□□ -0.66
CHD3-202ENST00000358181 UBE3BQ7Z3V4 1068 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 AFAP1L2Q8N4X5 818 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 HFM1A2PYH4 1435 aa10.95□□□□□ -0.66
CHD3-202ENST00000358181 TBC1D12O60347 775 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 NR1I2O75469 434 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 OCM2P0CE71 109 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 OCMP0CE72 109 aaPredicted RBP10.94□□□□□ -0.66
CHD3-202ENST00000358181 ZNF131P52739 623 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 RNASE9P60153 205 aaKnown RBP10.94□□□□□ -0.66
CHD3-202ENST00000358181 MAGED2Q9UNF1 606 aaPredicted RBP10.94□□□□□ -0.66
CHD3-202ENST00000358181 PRPF6O94906 941 aaKnown RBP10.94□□□□□ -0.66
CHD3-202ENST00000358181 Q3C1V9 767 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 HS1BP3Q53T59 392 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 CCDC122Q5T0U0 273 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 TIAM1Q13009 1591 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 CAMSAP2Q08AD1 1489 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 ATAD2Q6PL18 1390 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 WASLO00401 505 aaPredicted RBP10.94□□□□□ -0.66
CHD3-202ENST00000358181 RPS6KA2Q15349 733 aa10.94□□□□□ -0.66
CHD3-202ENST00000358181 FCHSD1Q86WN1 690 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms