RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 EDC3Q96F86 508 aaKnown RBP11.93□□□□□ -0.5
SYNE1-203ENST00000354674 USP26Q9BXU7 913 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 IL25Q9H293 177 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 RSPH14Q9UHP6 348 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 C10orf71Q711Q0 1435 aa11.93□□□□□ -0.5
SYNE1-203ENST00000354674 KIF13BQ9NQT8 1826 aa11.92□□□□□ -0.5
SYNE1-203ENST00000354674 SGSM2O43147 1006 aa11.92□□□□□ -0.5
SYNE1-203ENST00000354674 HMGN5P82970 282 aaKnown RBP11.92□□□□□ -0.5
SYNE1-203ENST00000354674 ZNF526Q8TF50 670 aaPredicted RBP11.92□□□□□ -0.5
SYNE1-203ENST00000354674 NDUFB9Q9Y6M9 179 aa11.92□□□□□ -0.5
SYNE1-203ENST00000354674 REC8O95072 547 aa11.92□□□□□ -0.5
SYNE1-203ENST00000354674 LMBRD1Q9NUN5 540 aa11.92□□□□□ -0.5
SYNE1-203ENST00000354674 CCDC66A2RUB6 948 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 WTIPA6NIX2 430 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-203ENST00000354674 PTMSP20962 102 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 GTF2F1P35269 517 aaKnown RBP eCLIP11.91□□□□□ -0.5
SYNE1-203ENST00000354674 DDIT3P35638 169 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 C15orf52Q6ZUT6 534 aaKnown RBP11.91□□□□□ -0.5
SYNE1-203ENST00000354674 MASTLQ96GX5 879 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 RNF216Q9NWF9 866 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-203ENST00000354674 LEMD3Q9Y2U8 911 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 DLEC1Q9Y238 1755 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 ZNF445P59923 1031 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 SAMD1Q6SPF0 538 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-203ENST00000354674 FBXO33Q7Z6M2 555 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 FSD1Q9BTV5 496 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 RAD50Q92878 1312 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 DOCK2Q92608 1830 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 GOLIM4O00461 696 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 CHAF1AQ13111 956 aaPredicted RBP11.91□□□□□ -0.5
SYNE1-203ENST00000354674 STYK1Q6J9G0 422 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 PRIMPOLQ96LW4 560 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 XDHP47989 1333 aa11.91□□□□□ -0.5
SYNE1-203ENST00000354674 ALDH1B1P30837 517 aa11.9□□□□□ -0.5
SYNE1-203ENST00000354674 ZAP70P43403 619 aa11.9□□□□□ -0.5
SYNE1-203ENST00000354674 BCAMP50895 628 aa11.9□□□□□ -0.5
SYNE1-203ENST00000354674 SP8Q8IXZ3 490 aa11.9□□□□□ -0.5
SYNE1-203ENST00000354674 ZGPATQ8N5A5 531 aaKnown RBP11.9□□□□□ -0.5
SYNE1-203ENST00000354674 RUFY2Q8WXA3 655 aa11.9□□□□□ -0.5
SYNE1-203ENST00000354674 FAM84BQ96KN1 310 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-203ENST00000354674 DIAPH3Q9NSV4 1193 aa11.9□□□□□ -0.5
SYNE1-203ENST00000354674 CHRM1P11229 460 aaPredicted RBP11.9□□□□□ -0.5
SYNE1-203ENST00000354674 SLC51AQ86UW1 340 aa11.9□□□□□ -0.5
SYNE1-203ENST00000354674 HMG20BQ9P0W2 317 aa11.9□□□□□ -0.5
SYNE1-203ENST00000354674 MED23Q9ULK4 1368 aa11.9□□□□□ -0.5
SYNE1-203ENST00000354674 K7ELQ4 463 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 CYP2E1P05181 493 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 NMIQ13287 307 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 CWC27Q6UX04 472 aaKnown RBP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 C10orf67Q8IYJ2 551 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 IL17RAQ96F46 866 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 OGFRQ9NZT2 677 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 ATP6V0A2Q9Y487 856 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 PDS5AQ29RF7 1337 aaKnown RBP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 PPEF1O14829 653 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 DTNBO60941 627 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 GPSM2P81274 684 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 RASGRF1Q13972 1273 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 PI16Q6UXB8 463 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 FAM227BQ96M60 508 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 C16orf45Q96MC5 204 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 KIF2CQ99661 725 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 HNRNPH2P55795 449 aaKnown RBP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 FKBP4Q02790 459 aaKnown RBP eCLIP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 TTF1Q15361 905 aaPredicted RBP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 TERF2Q15554 542 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 SPATA5Q8NB90 893 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 LSG1Q9H089 658 aaKnown RBP11.89□□□□□ -0.51
SYNE1-203ENST00000354674 PYCARDQ9ULZ3 195 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 MYH7P12883 1935 aa11.89□□□□□ -0.51
SYNE1-203ENST00000354674 A0A0D9SFI3 127 aa11.88□□□□□ -0.51
SYNE1-203ENST00000354674 SEMA3EO15041 775 aa11.88□□□□□ -0.51
SYNE1-203ENST00000354674 KLRK1P26718 216 aa11.88□□□□□ -0.51
SYNE1-203ENST00000354674 CAVIN4Q5BKX8 364 aa11.88□□□□□ -0.51
SYNE1-203ENST00000354674 C2CD5Q86YS7 1000 aa11.88□□□□□ -0.51
SYNE1-203ENST00000354674 PIBF1Q8WXW3 757 aa11.88□□□□□ -0.51
SYNE1-203ENST00000354674 COL1A1P02452 1464 aaPredicted RBP11.88□□□□□ -0.51
SYNE1-203ENST00000354674 DUOX1Q9NRD9 1551 aa11.88□□□□□ -0.51
SYNE1-203ENST00000354674 KIAA1551Q9HCM1 1747 aa11.88□□□□□ -0.51
SYNE1-203ENST00000354674 ATP2B4P23634 1241 aa11.88□□□□□ -0.51
SYNE1-203ENST00000354674 GYG1P46976 350 aa11.88□□□□□ -0.51
SYNE1-203ENST00000354674 H0YIN7 160 aa11.87□□□□□ -0.51
SYNE1-203ENST00000354674 TRIM66O15016 1216 aa11.87□□□□□ -0.51
SYNE1-203ENST00000354674 ZMYM1Q5SVZ6 1142 aa11.87□□□□□ -0.51
SYNE1-203ENST00000354674 LRSAM1Q6UWE0 723 aa11.87□□□□□ -0.51
SYNE1-203ENST00000354674 MTFR1LQ9H019 292 aa11.87□□□□□ -0.51
SYNE1-203ENST00000354674 HELLSQ9NRZ9 838 aa11.87□□□□□ -0.51
SYNE1-203ENST00000354674 ANKIB1Q9P2G1 1089 aa11.87□□□□□ -0.51
SYNE1-203ENST00000354674 FEZ2Q9UHY8 353 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-203ENST00000354674 RNF113AO15541 343 aaKnown RBP11.87□□□□□ -0.51
SYNE1-203ENST00000354674 ADCY5O95622 1261 aa11.87□□□□□ -0.51
SYNE1-203ENST00000354674 ZFYP08048 801 aaPredicted RBP11.87□□□□□ -0.51
SYNE1-203ENST00000354674 MCM5P33992 734 aa11.87□□□□□ -0.51
SYNE1-203ENST00000354674 NCBP1Q09161 790 aaKnown RBP11.87□□□□□ -0.51
SYNE1-203ENST00000354674 PIH1D3Q9NQM4 214 aaKnown RBP11.87□□□□□ -0.51
SYNE1-203ENST00000354674 GNL3LQ9NVN8 582 aaKnown RBP11.87□□□□□ -0.51
SYNE1-203ENST00000354674 LRRFIP1Q32MZ4 808 aaKnown RBP11.87□□□□□ -0.51
SYNE1-203ENST00000354674 TXNRD3Q86VQ6 643 aa11.87□□□□□ -0.51
SYNE1-203ENST00000354674 MYO5AQ9Y4I1 1855 aaKnown RBP11.86□□□□□ -0.51
SYNE1-203ENST00000354674 SNED1Q8TER0 1413 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms