RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PTH1RQ03431 593 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 USP17L1Q7RTZ2 530 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 SPRYD3Q8NCJ5 442 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 SUPT20HQ8NEM7 779 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 TCEANC2Q96MN5 208 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 BACH2Q9BYV9 841 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 CYP2D7A0A087X1C5 515 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 SMIM22K7EJ46 135 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 SAMD7Q7Z3H4 446 aa11.07□□□□□ -0.64
USP4-202ENST00000351842 ZSCAN29Q8IWY8 852 aaPredicted RBP11.07□□□□□ -0.64
USP4-202ENST00000351842 GPAA1O43292 621 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 EIF6P56537 245 aaKnown RBP11.06□□□□□ -0.64
USP4-202ENST00000351842 LCORLQ8N3X6 602 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 ESYT1Q9BSJ8 1104 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 EGFRP00533 1210 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 RRP12Q5JTH9 1297 aaKnown RBP11.06□□□□□ -0.64
USP4-202ENST00000351842 PRAMEF18Q5VWM3 479 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 CC2D2BQ6DHV5 1058 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 MAPKAPK5Q8IW41 473 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 OGFOD1Q8N543 542 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 WDR66Q8TBY9 1149 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 DAXXQ9UER7 740 aaPredicted RBP11.06□□□□□ -0.64
USP4-202ENST00000351842 ZNRF3Q9ULT6 936 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 MED23Q9ULK4 1368 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 MAST3O60307 1309 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 ZNF541Q9H0D2 1346 aa11.06□□□□□ -0.64
USP4-202ENST00000351842 CPA1P15085 419 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 EVX2Q03828 476 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 TTF1Q15361 905 aaPredicted RBP11.05□□□□□ -0.64
USP4-202ENST00000351842 SOGA3Q5TF21 947 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 PODNQ7Z5L7 613 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 ZNF384Q8TF68 577 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 NOL10Q9BSC4 688 aaKnown RBP11.05□□□□□ -0.64
USP4-202ENST00000351842 INCENPQ9NQS7 918 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 NAP1L2Q9ULW6 460 aaPredicted RBP11.05□□□□□ -0.64
USP4-202ENST00000351842 MTMR7Q9Y216 660 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 CHD4Q14839 1912 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 SLC4A3P48751 1232 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 TDO2P48775 406 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 CIAPIN1Q6FI81 312 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 DLK2Q6UY11 383 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 SLC4A4Q9Y6R1 1079 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 MYO5AQ9Y4I1 1855 aaKnown RBP11.05□□□□□ -0.64
USP4-202ENST00000351842 DCAF8L1A6NGE4 600 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 USP5P45974 858 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 PRKG1Q13976 671 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 EAPPQ56P03 285 aaPredicted RBP11.05□□□□□ -0.64
USP4-202ENST00000351842 TGFBRAP1Q8WUH2 860 aa11.05□□□□□ -0.64
USP4-202ENST00000351842 UPF3BQ9BZI7 483 aaKnown RBP11.05□□□□□ -0.64
USP4-202ENST00000351842 TDRD3Q9H7E2 651 aaKnown RBP11.05□□□□□ -0.64
USP4-202ENST00000351842 AOX1Q06278 1338 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 MAGEB6P1A0A0J9YX57 407 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 LMNB1P20700 586 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 ADD2P35612 726 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 BTDP43251 543 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 CHST3Q7LGC8 479 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 RUFY2Q8WXA3 655 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 NSUN4Q96CB9 384 aaKnown RBP11.04□□□□□ -0.64
USP4-202ENST00000351842 FAM196BA6NMK8 535 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 TCP10L2B9ZVM9 353 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 PRDM1O75626 825 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 GMPSP49915 693 aaPredicted RBP11.04□□□□□ -0.64
USP4-202ENST00000351842 MCMDC2Q4G0Z9 681 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 TAF6LQ9Y6J9 622 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 NRXN2Q9P2S2 1712 aa11.04□□□□□ -0.64
USP4-202ENST00000351842 CENPFP49454 3210 aa11.03□□□□□ -0.64
USP4-202ENST00000351842 SH3RF3Q8TEJ3 882 aaPredicted RBP11.03□□□□□ -0.64
USP4-202ENST00000351842 PSMD1Q99460 953 aa11.03□□□□□ -0.64
USP4-202ENST00000351842 ASTN2O75129 1339 aaPredicted RBP11.03□□□□□ -0.64
USP4-202ENST00000351842 IL1R1P14778 569 aa11.03□□□□□ -0.64
USP4-202ENST00000351842 DACT2Q5SW24 774 aa11.03□□□□□ -0.64
USP4-202ENST00000351842 LRRC2Q9BYS8 371 aa11.03□□□□□ -0.64
USP4-202ENST00000351842 MICALL2Q8IY33 904 aa11.03□□□□□ -0.64
USP4-202ENST00000351842 APPBP2Q92624 585 aa11.03□□□□□ -0.64
USP4-202ENST00000351842 C22orf23Q9BZE7 217 aa11.03□□□□□ -0.64
USP4-202ENST00000351842 PALD1Q9ULE6 856 aa11.03□□□□□ -0.64
USP4-202ENST00000351842 SGSM2O43147 1006 aa11.02□□□□□ -0.64
USP4-202ENST00000351842 RAD21O60216 631 aa11.02□□□□□ -0.64
USP4-202ENST00000351842 PPFIA3O75145 1194 aa11.02□□□□□ -0.64
USP4-202ENST00000351842 EPS15P42566 896 aa11.02□□□□□ -0.64
USP4-202ENST00000351842 NBPF9Q3BBW0 867 aa11.02□□□□□ -0.64
USP4-202ENST00000351842 TEX11Q8IYF3 940 aa11.02□□□□□ -0.64
USP4-202ENST00000351842 FOXD4L1Q9NU39 408 aa11.02□□□□□ -0.64
USP4-202ENST00000351842 MCM9Q9NXL9 1143 aa11.02□□□□□ -0.64
USP4-202ENST00000351842 FZD1Q9UP38 647 aa11.02□□□□□ -0.64
USP4-202ENST00000351842 DUOX1Q9NRD9 1551 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 MYH13Q9UKX3 1938 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 REC8O95072 547 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 CYP2D6P10635 497 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 CRKP46108 304 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 CFAP100Q494V2 611 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 SPTY2D1Q68D10 685 aaPredicted RBP11.02□□□□□ -0.65
USP4-202ENST00000351842 ZSCAN25Q6NSZ9 544 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 TEKT1Q969V4 418 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 NAPBQ9H115 298 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 USP40Q9NVE5 1235 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 COL4A5P29400 1685 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 IRS2Q9Y4H2 1338 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 SCN9AQ15858 1988 aa11.02□□□□□ -0.65
USP4-202ENST00000351842 USP17L8P0C7I0 530 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms