RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CLRN2A0PK11 232 aa19.52■□□□□ 0.72
CLN3-201ENST00000333496 HDLBPQ00341 1268 aaKnown RBP19.52■□□□□ 0.72
CLN3-201ENST00000333496 TNNI3KQ59H18 835 aa19.52■□□□□ 0.72
CLN3-201ENST00000333496 GBA2Q9HCG7 927 aaPredicted RBP19.52■□□□□ 0.72
CLN3-201ENST00000333496 EXOC6BQ9Y2D4 811 aa19.52■□□□□ 0.72
CLN3-201ENST00000333496 FPGT-TNNI3KV9GXZ4 949 aa19.52■□□□□ 0.72
CLN3-201ENST00000333496 PRDX5P30044 214 aa19.51■□□□□ 0.71
CLN3-201ENST00000333496 CYP4F22Q6NT55 531 aa19.51■□□□□ 0.71
CLN3-201ENST00000333496 MRIQ9BWK5 157 aa19.51■□□□□ 0.71
CLN3-201ENST00000333496 CHMP4BQ9H444 224 aaKnown RBP19.51■□□□□ 0.71
CLN3-201ENST00000333496 TDRD3Q9H7E2 651 aaKnown RBP19.51■□□□□ 0.71
CLN3-201ENST00000333496 PAPPA2Q9BXP8 1791 aa19.51■□□□□ 0.71
CLN3-201ENST00000333496 MYO5AQ9Y4I1 1855 aaKnown RBP19.51■□□□□ 0.71
CLN3-201ENST00000333496 WDR33Q9C0J8 1336 aaKnown RBP19.51■□□□□ 0.71
CLN3-201ENST00000333496 SALL1Q9NSC2 1324 aa19.51■□□□□ 0.71
CLN3-201ENST00000333496 THSD7BQ9C0I4 1608 aa19.51■□□□□ 0.71
CLN3-201ENST00000333496 MYO1BO43795 1136 aa19.51■□□□□ 0.71
CLN3-201ENST00000333496 RRP1P56182 461 aaKnown RBP19.51■□□□□ 0.71
CLN3-201ENST00000333496 HHIPL1Q96JK4 782 aa19.51■□□□□ 0.71
CLN3-201ENST00000333496 HUNKP57058 714 aa19.5■□□□□ 0.71
CLN3-201ENST00000333496 SPDYE2Q495Y8 402 aa19.5■□□□□ 0.71
CLN3-201ENST00000333496 C2orf69Q8N8R5 385 aa19.5■□□□□ 0.71
CLN3-201ENST00000333496 TEKT1Q969V4 418 aa19.5■□□□□ 0.71
CLN3-201ENST00000333496 CAPNS2Q96L46 248 aa19.5■□□□□ 0.71
CLN3-201ENST00000333496 DBNDD2Q9BQY9 259 aa19.5■□□□□ 0.71
CLN3-201ENST00000333496 DEFB129Q9H1M3 183 aa19.5■□□□□ 0.71
CLN3-201ENST00000333496 ZNF70Q9UC06 446 aaPredicted RBP19.5■□□□□ 0.71
CLN3-201ENST00000333496 PDS5AQ29RF7 1337 aaKnown RBP19.49■□□□□ 0.71
CLN3-201ENST00000333496 ARID4AP29374 1257 aaPredicted RBP19.49■□□□□ 0.71
CLN3-201ENST00000333496 ZDHHC15Q96MV8 337 aa19.49■□□□□ 0.71
CLN3-201ENST00000333496 VEZTQ9HBM0 779 aa19.49■□□□□ 0.71
CLN3-201ENST00000333496 MAST3O60307 1309 aa19.49■□□□□ 0.71
CLN3-201ENST00000333496 GORABQ5T7V8 394 aa19.48■□□□□ 0.71
CLN3-201ENST00000333496 APOBEC3HQ6NTF7 200 aaKnown RBP19.48■□□□□ 0.71
CLN3-201ENST00000333496 HHIPL2Q6UWX4 724 aa19.48■□□□□ 0.71
CLN3-201ENST00000333496 PI16Q6UXB8 463 aa19.48■□□□□ 0.71
CLN3-201ENST00000333496 EAF2Q96CJ1 260 aaPredicted RBP19.48■□□□□ 0.71
CLN3-201ENST00000333496 HMG20BQ9P0W2 317 aa19.48■□□□□ 0.71
CLN3-201ENST00000333496 LDHBP07195 334 aaKnown RBP19.47■□□□□ 0.71
CLN3-201ENST00000333496 MCAMP43121 646 aa19.47■□□□□ 0.71
CLN3-201ENST00000333496 DIXDC1Q155Q3 683 aa19.47■□□□□ 0.71
CLN3-201ENST00000333496 PAXIP1Q6ZW49 1069 aaPredicted RBP19.47■□□□□ 0.71
CLN3-201ENST00000333496 MOB2Q70IA6 237 aa19.47■□□□□ 0.71
CLN3-201ENST00000333496 DBNLQ9UJU6 430 aaKnown RBP19.47■□□□□ 0.71
CLN3-201ENST00000333496 ECE1P42892 770 aa19.47■□□□□ 0.71
CLN3-201ENST00000333496 GRM1Q13255 1194 aa19.47■□□□□ 0.71
CLN3-201ENST00000333496 CCDC8Q9H0W5 538 aaPredicted RBP19.47■□□□□ 0.71
CLN3-201ENST00000333496 TLR7Q9NYK1 1049 aaKnown RBP19.47■□□□□ 0.71
CLN3-201ENST00000333496 SSC5DA1L4H1 1573 aa19.46■□□□□ 0.71
CLN3-201ENST00000333496 HMMRO75330 724 aa19.46■□□□□ 0.71
CLN3-201ENST00000333496 ERC1Q8IUD2 1116 aa19.46■□□□□ 0.71
CLN3-201ENST00000333496 SPATA5Q8NB90 893 aa19.46■□□□□ 0.71
CLN3-201ENST00000333496 ABCF2Q9UG63 623 aa19.46■□□□□ 0.71
CLN3-201ENST00000333496 DAGLAQ9Y4D2 1042 aa19.46■□□□□ 0.71
CLN3-201ENST00000333496 FKBP1BP68106 108 aa19.45■□□□□ 0.7
CLN3-201ENST00000333496 RASA3Q14644 834 aa19.45■□□□□ 0.7
CLN3-201ENST00000333496 ZGPATQ8N5A5 531 aaKnown RBP19.45■□□□□ 0.7
CLN3-201ENST00000333496 RHPN1Q8TCX5 695 aa19.45■□□□□ 0.7
CLN3-201ENST00000333496 PPP2R3BQ9Y5P8 575 aa19.45■□□□□ 0.7
CLN3-201ENST00000333496 AOC2O75106 756 aa19.44■□□□□ 0.7
CLN3-201ENST00000333496 UQCRFS1P1P0C7P4 283 aa19.44■□□□□ 0.7
CLN3-201ENST00000333496 CACNB3P54284 484 aa19.44■□□□□ 0.7
CLN3-201ENST00000333496 HSP90AB4PQ58FF6 505 aa19.44■□□□□ 0.7
CLN3-201ENST00000333496 RGMBQ6NW40 437 aa19.44■□□□□ 0.7
CLN3-201ENST00000333496 IL1RAPL2Q9NP60 686 aa19.44■□□□□ 0.7
CLN3-201ENST00000333496 FZD1Q9UP38 647 aa19.44■□□□□ 0.7
CLN3-201ENST00000333496 FAM155AB1AL88 458 aaPredicted RBP19.43■□□□□ 0.7
CLN3-201ENST00000333496 TCP10L2B9ZVM9 353 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 HSPA1AP0DMV8 641 aaKnown RBP19.43■□□□□ 0.7
CLN3-201ENST00000333496 HSPA1BP0DMV9 641 aaKnown RBP19.43■□□□□ 0.7
CLN3-201ENST00000333496 NF2P35240 595 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 CCDC158Q5M9N0 1113 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 TTC39AQ5SRH9 613 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 NBPF12Q5TAG4 269 aaPredicted RBP19.43■□□□□ 0.7
CLN3-201ENST00000333496 TBC1D9Q6ZT07 1266 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 ZNF384Q8TF68 577 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 AK9Q5TCS8 1911 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 UBE2Q2LH0YL09 131 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 TNFAIP1Q13829 316 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 CDAN1Q8IWY9 1227 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 KIF1BPQ96EK5 621 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 ZNF512BQ96KM6 892 aaPredicted RBP19.43■□□□□ 0.7
CLN3-201ENST00000333496 TEPSINQ96N21 525 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 ZIC5Q96T25 663 aa19.43■□□□□ 0.7
CLN3-201ENST00000333496 APBB1O00213 710 aa19.42■□□□□ 0.7
CLN3-201ENST00000333496 PRKG1Q13976 671 aa19.42■□□□□ 0.7
CLN3-201ENST00000333496 SNRKQ9NRH2 765 aa19.42■□□□□ 0.7
CLN3-201ENST00000333496 OTOFQ9HC10 1997 aa19.42■□□□□ 0.7
CLN3-201ENST00000333496 ZNF157P51786 506 aaPredicted RBP19.41■□□□□ 0.7
CLN3-201ENST00000333496 SPTY2D1Q68D10 685 aaPredicted RBP19.41■□□□□ 0.7
CLN3-201ENST00000333496 CDC42EP5Q6NZY7 148 aa19.41■□□□□ 0.7
CLN3-201ENST00000333496 ERICH6Q7L0X2 663 aa19.41■□□□□ 0.7
CLN3-201ENST00000333496 AACSQ86V21 672 aa19.41■□□□□ 0.7
CLN3-201ENST00000333496 TMEM39BQ9GZU3 492 aa19.41■□□□□ 0.7
CLN3-201ENST00000333496 WBP1LQ9NX94 342 aa19.41■□□□□ 0.7
CLN3-201ENST00000333496 GAKO14976 1311 aa19.41■□□□□ 0.7
CLN3-201ENST00000333496 MAST2Q6P0Q8 1798 aa19.4■□□□□ 0.7
CLN3-201ENST00000333496 RAB11FIP3O75154 756 aa19.4■□□□□ 0.7
CLN3-201ENST00000333496 MAP2K2P36507 400 aa19.4■□□□□ 0.7
CLN3-201ENST00000333496 MECOMQ03112 1051 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms