RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TTLL5Q6EMB2 1281 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 LARGE2Q8N3Y3 721 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 MIGA1Q8NAN2 632 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 DLEC1Q9Y238 1755 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 ECE2O60344 883 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 KIAA2012Q0VF49 1180 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 TBC1D22AQ8WUA7 517 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 TCRBV5S4A2TA0A5A2 114 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 APPP05067 770 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 GLIPR1L2Q4G1C9 344 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 PODNQ7Z5L7 613 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 PSMD1Q99460 953 aa12□□□□□ -0.49
HMGB3-201ENST00000325307 RBM8AQ9Y5S9 174 aaKnown RBP12□□□□□ -0.49
HMGB3-201ENST00000325307 MBD4O95243 580 aa11.99□□□□□ -0.49
HMGB3-201ENST00000325307 VPS53Q5VIR6 699 aa11.99□□□□□ -0.49
HMGB3-201ENST00000325307 MYH13Q9UKX3 1938 aa11.99□□□□□ -0.49
HMGB3-201ENST00000325307 TAOK3Q9H2K8 898 aa11.99□□□□□ -0.49
HMGB3-201ENST00000325307 F8W031 263 aaPredicted RBP11.99□□□□□ -0.49
HMGB3-201ENST00000325307 NSUN4Q96CB9 384 aaKnown RBP11.99□□□□□ -0.49
HMGB3-201ENST00000325307 ARMT1Q9H993 441 aa11.99□□□□□ -0.49
HMGB3-201ENST00000325307 MYO5AQ9Y4I1 1855 aaKnown RBP11.99□□□□□ -0.49
HMGB3-201ENST00000325307 SALL1Q9NSC2 1324 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 EPB41L2O43491 1005 aaKnown RBP11.98□□□□□ -0.49
HMGB3-201ENST00000325307 MAP4K1Q92918 833 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 MAGEB6P1A0A0J9YX57 407 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 HSPD1P10809 573 aaKnown RBP11.98□□□□□ -0.49
HMGB3-201ENST00000325307 KCNQ5Q9NR82 932 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 FAM205AQ6ZU69 1335 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 TULP1O00294 542 aaPredicted RBP11.98□□□□□ -0.49
HMGB3-201ENST00000325307 ZKSCAN1P17029 563 aaPredicted RBP11.98□□□□□ -0.49
HMGB3-201ENST00000325307 HSPA4P34932 840 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 GSTO1P78417 241 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 GRIK5Q16478 980 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 RNF20Q5VTR2 975 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 ADGRA1Q86SQ6 560 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 MXD3Q9BW11 206 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 TBC1D2Q9BYX2 928 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 PALD1Q9ULE6 856 aa11.98□□□□□ -0.49
HMGB3-201ENST00000325307 U3KPZ7 1027 aaPredicted RBP11.98□□□□□ -0.49
HMGB3-201ENST00000325307 DIXDC1Q155Q3 683 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 NOL10Q9BSC4 688 aaKnown RBP11.97□□□□□ -0.49
HMGB3-201ENST00000325307 SNED1Q8TER0 1413 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 MYH7P12883 1935 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 ZBTB22O15209 634 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 NIM1KQ8IY84 436 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 LCORLQ8N3X6 602 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 DSCC1Q9BVC3 393 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 USP17L3A6NCW0 530 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 USP17L4A6NCW7 530 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 CREB3L3Q68CJ9 461 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 USP17L1Q7RTZ2 530 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 STRBPQ96SI9 672 aaKnown RBP11.97□□□□□ -0.49
HMGB3-201ENST00000325307 KIF2CQ99661 725 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 AATFQ9NY61 560 aaKnown RBP eCLIP11.97□□□□□ -0.49
HMGB3-201ENST00000325307 KIAA1551Q9HCM1 1747 aa11.97□□□□□ -0.49
HMGB3-201ENST00000325307 LDHCP07864 332 aa11.96□□□□□ -0.49
HMGB3-201ENST00000325307 IARSP41252 1262 aaKnown RBP11.96□□□□□ -0.49
HMGB3-201ENST00000325307 ZNF384Q8TF68 577 aa11.96□□□□□ -0.49
HMGB3-201ENST00000325307 SLC4A4Q9Y6R1 1079 aa11.96□□□□□ -0.49
HMGB3-201ENST00000325307 DYNLL1P63167 89 aaKnown RBP11.96□□□□□ -0.5
HMGB3-201ENST00000325307 JDP2Q8WYK2 163 aa11.96□□□□□ -0.5
HMGB3-201ENST00000325307 SYT17Q9BSW7 474 aa11.96□□□□□ -0.5
HMGB3-201ENST00000325307 DOCK2Q92608 1830 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 STRIP1Q5VSL9 837 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 SLF2Q8IX21 1173 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 CTNNA3Q9UI47 895 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 TTF2Q9UNY4 1162 aaKnown RBP11.95□□□□□ -0.5
HMGB3-201ENST00000325307 SLC27A2O14975 620 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 RAD17O75943 681 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 ANAPC15P60006 121 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 NECTIN1Q15223 517 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 RASEFQ8IZ41 740 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 CERS5Q8N5B7 392 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 SNX14Q9Y5W7 946 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 NFKBIEO00221 500 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 PRKAB2O43741 272 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 GNAT2P19087 354 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 RASSF7Q02833 373 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 RABEP1Q15276 862 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 ARHGAP27Q6ZUM4 889 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 NACAP1Q9BZK3 213 aa11.95□□□□□ -0.5
HMGB3-201ENST00000325307 BAG3O95817 575 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 TDO2P48775 406 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 SCNN1DP51172 638 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 SRCAPQ6ZRS2 3230 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 KIAA0825Q8IV33 1275 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 VPS33BQ9H267 617 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 YDJCA8MPS7 323 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 FGAP02671 866 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 HAND2P61296 217 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 TMED8Q6PL24 325 aaPredicted RBP11.94□□□□□ -0.5
HMGB3-201ENST00000325307 NAPBQ9H115 298 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 PATL2C9JE40 543 aaKnown RBP11.94□□□□□ -0.5
HMGB3-201ENST00000325307 SDR42E1Q8WUS8 393 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 JAKMIP1Q96N16 626 aaKnown RBP11.94□□□□□ -0.5
HMGB3-201ENST00000325307 UPF3BQ9BZI7 483 aaKnown RBP11.94□□□□□ -0.5
HMGB3-201ENST00000325307 CRNKL1Q9BZJ0 848 aaKnown RBP11.94□□□□□ -0.5
HMGB3-201ENST00000325307 ZNRF3Q9ULT6 936 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 SUGT1Q9Y2Z0 365 aa11.94□□□□□ -0.5
HMGB3-201ENST00000325307 CHD4Q14839 1912 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms