RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 TBC1D22AQ8WUA7 517 aa18.65■□□□□ 0.58
CCDC88B-201ENST00000301897 FAM84BQ96KN1 310 aaPredicted RBP18.65■□□□□ 0.58
CCDC88B-201ENST00000301897 PTPN18Q99952 460 aa18.65■□□□□ 0.58
CCDC88B-201ENST00000301897 TDRD3Q9H7E2 651 aaKnown RBP18.65■□□□□ 0.58
CCDC88B-201ENST00000301897 ELP3Q9H9T3 547 aa18.65■□□□□ 0.58
CCDC88B-201ENST00000301897 CSADQ9Y600 493 aa18.65■□□□□ 0.58
CCDC88B-201ENST00000301897 CRKP46108 304 aa18.64■□□□□ 0.57
CCDC88B-201ENST00000301897 GYG1P46976 350 aa18.64■□□□□ 0.57
CCDC88B-201ENST00000301897 HOOK2Q96ED9 719 aa18.64■□□□□ 0.57
CCDC88B-201ENST00000301897 ZFYVE28Q9HCC9 887 aa18.64■□□□□ 0.57
CCDC88B-201ENST00000301897 AOX1Q06278 1338 aa18.64■□□□□ 0.57
CCDC88B-201ENST00000301897 MAP3K9P80192 1104 aa18.63■□□□□ 0.57
CCDC88B-201ENST00000301897 CAVIN4Q5BKX8 364 aa18.63■□□□□ 0.57
CCDC88B-201ENST00000301897 SLC4A10Q6U841 1118 aa18.63■□□□□ 0.57
CCDC88B-201ENST00000301897 NBPF11Q86T75 865 aa18.63■□□□□ 0.57
CCDC88B-201ENST00000301897 MS4A4AQ96JQ5 239 aa18.63■□□□□ 0.57
CCDC88B-201ENST00000301897 TEPSINQ96N21 525 aa18.63■□□□□ 0.57
CCDC88B-201ENST00000301897 SALL2Q9Y467 1007 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-201ENST00000301897 POTEFA5A3E0 1075 aa18.62■□□□□ 0.57
CCDC88B-201ENST00000301897 TCP10L2B9ZVM9 353 aa18.62■□□□□ 0.57
CCDC88B-201ENST00000301897 FRAT2O75474 233 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-201ENST00000301897 TAF1CQ15572 869 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-201ENST00000301897 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-201ENST00000301897 TMEM106CQ9BVX2 250 aa18.62■□□□□ 0.57
CCDC88B-201ENST00000301897 RIPOR2Q9Y4F9 1068 aa18.62■□□□□ 0.57
CCDC88B-201ENST00000301897 MAST3O60307 1309 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 CCL15-CCL14A0A0B4J2E2 113 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 VGLL4Q14135 290 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 CCL15Q16663 113 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 FBXO33Q7Z6M2 555 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 TEKT1Q969V4 418 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 SUCLG2Q96I99 432 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 MRIQ9BWK5 157 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 TMEM39BQ9GZU3 492 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 ZCCHC17Q9NP64 241 aaKnown RBP18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 TMOD2Q9NZR1 351 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 CEP290O15078 2479 aa18.61■□□□□ 0.57
CCDC88B-201ENST00000301897 UTYO14607 1347 aa18.6■□□□□ 0.57
CCDC88B-201ENST00000301897 ANP32CO43423 234 aa18.6■□□□□ 0.57
CCDC88B-201ENST00000301897 FKBP1CQ5VVH2 108 aa18.6■□□□□ 0.57
CCDC88B-201ENST00000301897 BRI3BPQ8WY22 251 aa18.6■□□□□ 0.57
CCDC88B-201ENST00000301897 PUS3Q9BZE2 481 aaKnown RBP18.6■□□□□ 0.57
CCDC88B-201ENST00000301897 SUGT1Q9Y2Z0 365 aa18.6■□□□□ 0.57
CCDC88B-201ENST00000301897 BRCA2P51587 3418 aa18.59■□□□□ 0.57
CCDC88B-201ENST00000301897 CETPP11597 493 aa18.59■□□□□ 0.57
CCDC88B-201ENST00000301897 SLC9C1Q4G0N8 1177 aa18.59■□□□□ 0.57
CCDC88B-201ENST00000301897 METTL24Q5JXM2 366 aa18.59■□□□□ 0.57
CCDC88B-201ENST00000301897 KIF16BQ96L93 1317 aa18.58■□□□□ 0.57
CCDC88B-201ENST00000301897 SPDYE5A6NIY4 337 aa18.58■□□□□ 0.56
CCDC88B-201ENST00000301897 CHAF1AQ13111 956 aaPredicted RBP18.58■□□□□ 0.56
CCDC88B-201ENST00000301897 KIF22Q14807 665 aa18.58■□□□□ 0.56
CCDC88B-201ENST00000301897 RABL6Q3YEC7 729 aaPredicted RBP18.58■□□□□ 0.56
CCDC88B-201ENST00000301897 FAM83AQ86UY5 434 aa18.58■□□□□ 0.56
CCDC88B-201ENST00000301897 ERO1BQ86YB8 467 aa18.58■□□□□ 0.56
CCDC88B-201ENST00000301897 OTUD5Q96G74 571 aa18.58■□□□□ 0.56
CCDC88B-201ENST00000301897 KAZALD1Q96I82 304 aa18.58■□□□□ 0.56
CCDC88B-201ENST00000301897 ZNF333Q96JL9 665 aa18.58■□□□□ 0.56
CCDC88B-201ENST00000301897 ZDHHC15Q96MV8 337 aa18.58■□□□□ 0.56
CCDC88B-201ENST00000301897 GNRH1P01148 92 aa18.57■□□□□ 0.56
CCDC88B-201ENST00000301897 NBPF7P0C2Y1 421 aaPredicted RBP18.57■□□□□ 0.56
CCDC88B-201ENST00000301897 HABP4Q5JVS0 413 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-201ENST00000301897 DCAF15Q66K64 600 aa18.57■□□□□ 0.56
CCDC88B-201ENST00000301897 CDAN1Q8IWY9 1227 aa18.57■□□□□ 0.56
CCDC88B-201ENST00000301897 BICC1Q9H694 974 aaKnown RBP18.57■□□□□ 0.56
CCDC88B-201ENST00000301897 SPINK5Q9NQ38 1064 aaPredicted RBP18.57■□□□□ 0.56
CCDC88B-201ENST00000301897 PDE8BO95263 885 aa18.56■□□□□ 0.56
CCDC88B-201ENST00000301897 EN2P19622 333 aaPredicted RBP18.56■□□□□ 0.56
CCDC88B-201ENST00000301897 SNAPC2Q13487 334 aa18.56■□□□□ 0.56
CCDC88B-201ENST00000301897 CNKSR2Q8WXI2 1034 aa18.56■□□□□ 0.56
CCDC88B-201ENST00000301897 WRNIP1Q96S55 665 aa18.56■□□□□ 0.56
CCDC88B-201ENST00000301897 RPAP1Q9BWH6 1393 aaPredicted RBP18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 TLR2O60603 784 aa18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 IFIT1P09914 478 aaKnown RBP18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 PRMT2P55345 433 aa18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 PPIL2Q13356 520 aa18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 HHIPL2Q6UWX4 724 aa18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 FAM43AQ8N2R8 423 aa18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 VGLL2Q8N8G2 317 aa18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 IQSEC3Q9UPP2 1182 aaPredicted RBP18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 PTCH2Q9Y6C5 1203 aa18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 SNCAIPQ9Y6H5 919 aa18.55■□□□□ 0.56
CCDC88B-201ENST00000301897 PUM3Q15397 648 aaKnown RBP18.54■□□□□ 0.56
CCDC88B-201ENST00000301897 SLC4A8Q2Y0W8 1093 aa18.54■□□□□ 0.56
CCDC88B-201ENST00000301897 LRRC24Q50LG9 513 aa18.54■□□□□ 0.56
CCDC88B-201ENST00000301897 PTPRCP08575 1304 aa18.53■□□□□ 0.56
CCDC88B-201ENST00000301897 LACTBP83111 547 aaPredicted RBP18.53■□□□□ 0.56
CCDC88B-201ENST00000301897 CAP1Q01518 475 aa18.53■□□□□ 0.56
CCDC88B-201ENST00000301897 GRIK5Q16478 980 aa18.53■□□□□ 0.56
CCDC88B-201ENST00000301897 ANKRD44Q8N8A2 993 aa18.53■□□□□ 0.56
CCDC88B-201ENST00000301897 BTBD19C9JJ37 291 aa18.52■□□□□ 0.56
CCDC88B-201ENST00000301897 BCAMP50895 628 aa18.52■□□□□ 0.56
CCDC88B-201ENST00000301897 CACNB3P54284 484 aa18.52■□□□□ 0.56
CCDC88B-201ENST00000301897 PPATQ06203 517 aa18.52■□□□□ 0.56
CCDC88B-201ENST00000301897 APOBEC3HQ6NTF7 200 aaKnown RBP18.52■□□□□ 0.56
CCDC88B-201ENST00000301897 WDR66Q8TBY9 1149 aa18.52■□□□□ 0.56
CCDC88B-201ENST00000301897 ZNF341Q9BYN7 854 aa18.52■□□□□ 0.56
CCDC88B-201ENST00000301897 MYH13Q9UKX3 1938 aa18.51■□□□□ 0.55
CCDC88B-201ENST00000301897 IRF6O14896 467 aa18.51■□□□□ 0.55
CCDC88B-201ENST00000301897 ZKSCAN4Q969J2 545 aaPredicted RBP18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 193.5 ms