RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 BRAPQ7Z569 592 aa11.15□□□□□ -0.63
COL6A3-201ENST00000295550 TCP11L1Q9NUJ3 509 aa11.15□□□□□ -0.63
COL6A3-201ENST00000295550 RMND1Q9NWS8 449 aa11.15□□□□□ -0.63
COL6A3-201ENST00000295550 SMIM23A6NLE4 172 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 IFIT3O14879 490 aaKnown RBP11.14□□□□□ -0.63
COL6A3-201ENST00000295550 CAVIN4Q5BKX8 364 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 KRBA2Q6ZNG9 492 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 MFSD6Q6ZSS7 791 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 GSTA5Q7RTV2 222 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 XAGE3Q8WTP9 111 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 SEC62Q99442 399 aaKnown RBP11.14□□□□□ -0.63
COL6A3-201ENST00000295550 EHMT1Q9H9B1 1298 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 OGFRQ9NZT2 677 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 CYLC1P35663 651 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-201ENST00000295550 IL15P40933 162 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-201ENST00000295550 KRT24Q2M2I5 525 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 BMP15O95972 392 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 TSNAXIP1Q2TAA8 658 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 MICU3Q86XE3 530 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 FAM114A2Q9NRY5 505 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.14□□□□□ -0.63
COL6A3-201ENST00000295550 IBTKQ9P2D0 1353 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-201ENST00000295550 ATP2A1O14983 1001 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 LMBRD1Q9NUN5 540 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 CNNM2Q9H8M5 875 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 LUC7L2Q9Y383 392 aaKnown RBP11.14□□□□□ -0.63
COL6A3-201ENST00000295550 FOXO3O43524 673 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 LMNTD2Q8IXW0 634 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 KRT23Q9C075 422 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 PTCD1O75127 700 aaKnown RBP11.14□□□□□ -0.63
COL6A3-201ENST00000295550 HOXC9P31274 260 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 STXBP4Q6ZWJ1 553 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 CCDC144CPQ8IYA2 1237 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 SMC1BQ8NDV3 1235 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 DNAJC25Q9H1X3 360 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 IQCA1Q86XH1 822 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 SMAP1Q8IYB5 467 aaPredicted RBP11.14□□□□□ -0.63
COL6A3-201ENST00000295550 MAP3K19Q56UN5 1328 aa11.14□□□□□ -0.63
COL6A3-201ENST00000295550 CFAP157Q5JU67 520 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 CCDC110Q8TBZ0 833 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 POLR3DP05423 398 aaPredicted RBP11.13□□□□□ -0.63
COL6A3-201ENST00000295550 CHMP4BP1P59074 171 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 VCX3BQ9H321 246 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 PTGS1P23219 599 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 CCDC50Q8IVM0 306 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 CACNA2D3Q8IZS8 1091 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 RANBP6O60518 1105 aaKnown RBP11.13□□□□□ -0.63
COL6A3-201ENST00000295550 KIF5AQ12840 1032 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 CEP85LQ5SZL2 805 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 CCDC186Q7Z3E2 898 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 ODF2LQ9ULJ1 636 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 ALDH3A1P30838 453 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 EYA1Q99502 592 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 ANXA1P04083 346 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 FAM160A1Q05DH4 1040 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 INTS8Q75QN2 995 aaKnown RBP11.13□□□□□ -0.63
COL6A3-201ENST00000295550 KLF18A0A0U1RQI7 1052 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 AFAP1L1Q8TED9 768 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 RHOXF2BP0C7M4 288 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 CCDC82Q8N4S0 544 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 EPSTI1Q96J88 318 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 RHOXF2Q9BQY4 288 aa11.13□□□□□ -0.63
COL6A3-201ENST00000295550 TRMT112Q9UI30 125 aaKnown RBP11.13□□□□□ -0.63
COL6A3-201ENST00000295550 PPRC1Q5VV67 1664 aaKnown RBP11.13□□□□□ -0.63
COL6A3-201ENST00000295550 AOPEPQ8N6M6 819 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 JAKMIP2Q96AA8 810 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 SGSM2O43147 1006 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 ATP5J2-PTCD1G3V325 749 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 IFT81Q8WYA0 676 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 TTC36A6NLP5 189 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 RNF113AO15541 343 aaKnown RBP11.12□□□□□ -0.63
COL6A3-201ENST00000295550 TRIM7Q9C029 511 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 GMNNO75496 209 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 HAND2P61296 217 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 POTEDQ86YR6 584 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 ITSN1Q15811 1721 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 CDC42BPGQ6DT37 1551 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 CASQ2O14958 399 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-201ENST00000295550 ZNF853P0CG23 659 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 SUDS3Q9H7L9 328 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-201ENST00000295550 TBCAO75347 108 aaKnown RBP11.12□□□□□ -0.63
COL6A3-201ENST00000295550 RPS6KB1P23443 525 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 GBP7Q8N8V2 638 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-201ENST00000295550 ZBTB9Q96C00 473 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 LRRC45Q96CN5 670 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 UQCRFS1P1P0C7P4 283 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 HPDP32754 393 aaPredicted RBP11.12□□□□□ -0.63
COL6A3-201ENST00000295550 BICC1Q9H694 974 aaKnown RBP11.12□□□□□ -0.63
COL6A3-201ENST00000295550 PPFIBP2Q8ND30 876 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 ZBTB3Q9H5J0 574 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 ABCF2Q9UG63 623 aa11.12□□□□□ -0.63
COL6A3-201ENST00000295550 TSGA10Q9BZW7 698 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 IDEP14735 1019 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 MKNK2Q9HBH9 465 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 SPTLC2O15270 562 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 RFC1P35251 1148 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-201ENST00000295550 VAV2P52735 878 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 PDE1CQ14123 709 aaPredicted RBP11.11□□□□□ -0.63
COL6A3-201ENST00000295550 CCDC170Q8IYT3 715 aa11.11□□□□□ -0.63
COL6A3-201ENST00000295550 LLPHQ9BRT6 129 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms