RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 CDAN1Q8IWY9 1227 aa17.96■□□□□ 0.47
HMGN3-201ENST00000275036 VEZTQ9HBM0 779 aa17.96■□□□□ 0.47
HMGN3-201ENST00000275036 RNF186Q9NXI6 227 aa17.96■□□□□ 0.47
HMGN3-201ENST00000275036 CEP126Q9P2H0 1117 aa17.96■□□□□ 0.47
HMGN3-201ENST00000275036 OTOFQ9HC10 1997 aa17.95■□□□□ 0.46
HMGN3-201ENST00000275036 PNMA6EA0A0J9YXQ4 647 aa17.95■□□□□ 0.46
HMGN3-201ENST00000275036 NF2P35240 595 aa17.95■□□□□ 0.46
HMGN3-201ENST00000275036 SPDYE2Q495Y8 402 aa17.95■□□□□ 0.46
HMGN3-201ENST00000275036 LDLRAD1Q5T700 205 aa17.95■□□□□ 0.46
HMGN3-201ENST00000275036 NBPF12Q5TAG4 269 aaPredicted RBP17.95■□□□□ 0.46
HMGN3-201ENST00000275036 TDRD3Q9H7E2 651 aaKnown RBP17.95■□□□□ 0.46
HMGN3-201ENST00000275036 ZNF70Q9UC06 446 aaPredicted RBP17.95■□□□□ 0.46
HMGN3-201ENST00000275036 ANGEL1Q9UNK9 670 aaKnown RBP17.95■□□□□ 0.46
HMGN3-201ENST00000275036 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.95■□□□□ 0.46
HMGN3-201ENST00000275036 AKAP11Q9UKA4 1901 aa17.95■□□□□ 0.46
HMGN3-201ENST00000275036 MYO1BO43795 1136 aa17.94■□□□□ 0.46
HMGN3-201ENST00000275036 FRAT2O75474 233 aaPredicted RBP17.94■□□□□ 0.46
HMGN3-201ENST00000275036 RASA3Q14644 834 aa17.94■□□□□ 0.46
HMGN3-201ENST00000275036 DZIP1LQ8IYY4 767 aaKnown RBP17.94■□□□□ 0.46
HMGN3-201ENST00000275036 SAGE1Q9NXZ1 904 aa17.94■□□□□ 0.46
HMGN3-201ENST00000275036 PPP2R3BQ9Y5P8 575 aa17.94■□□□□ 0.46
HMGN3-201ENST00000275036 TRPA1O75762 1119 aa17.93■□□□□ 0.46
HMGN3-201ENST00000275036 ADORA1P30542 326 aa17.93■□□□□ 0.46
HMGN3-201ENST00000275036 MKRN3Q13064 507 aaKnown RBP17.93■□□□□ 0.46
HMGN3-201ENST00000275036 FTSJ3Q8IY81 847 aaKnown RBP17.93■□□□□ 0.46
HMGN3-201ENST00000275036 LAMB1P07942 1786 aa17.92■□□□□ 0.46
HMGN3-201ENST00000275036 MAP3K11Q16584 847 aa17.92■□□□□ 0.46
HMGN3-201ENST00000275036 ARMC9Q7Z3E5 817 aa17.92■□□□□ 0.46
HMGN3-201ENST00000275036 TBC1D22AQ8WUA7 517 aa17.92■□□□□ 0.46
HMGN3-201ENST00000275036 ABHD8Q96I13 439 aa17.92■□□□□ 0.46
HMGN3-201ENST00000275036 CLMNQ96JQ2 1002 aa17.92■□□□□ 0.46
HMGN3-201ENST00000275036 TEPSINQ96N21 525 aa17.92■□□□□ 0.46
HMGN3-201ENST00000275036 C1orf115Q9H7X2 142 aa17.92■□□□□ 0.46
HMGN3-201ENST00000275036 ZBTB7BO15156 539 aaPredicted RBP17.91■□□□□ 0.46
HMGN3-201ENST00000275036 PHKA1P46020 1223 aa17.91■□□□□ 0.46
HMGN3-201ENST00000275036 CACNB3P54284 484 aa17.91■□□□□ 0.46
HMGN3-201ENST00000275036 TFCP2Q12800 502 aa17.91■□□□□ 0.46
HMGN3-201ENST00000275036 ITPRIPQ8IWB1 547 aa17.91■□□□□ 0.46
HMGN3-201ENST00000275036 TCP10L2B9ZVM9 353 aa17.9■□□□□ 0.46
HMGN3-201ENST00000275036 TIMM10P62072 90 aa17.9■□□□□ 0.46
HMGN3-201ENST00000275036 PANK1Q8TE04 598 aa17.9■□□□□ 0.46
HMGN3-201ENST00000275036 TMEM39BQ9GZU3 492 aa17.9■□□□□ 0.46
HMGN3-201ENST00000275036 USP2O75604 605 aaPredicted RBP17.89■□□□□ 0.45
HMGN3-201ENST00000275036 HDLBPQ00341 1268 aaKnown RBP17.89■□□□□ 0.45
HMGN3-201ENST00000275036 POLA2Q14181 598 aa17.89■□□□□ 0.45
HMGN3-201ENST00000275036 SPRYD7Q5W111 196 aa17.89■□□□□ 0.45
HMGN3-201ENST00000275036 APOBEC3HQ6NTF7 200 aaKnown RBP17.89■□□□□ 0.45
HMGN3-201ENST00000275036 TEKT1Q969V4 418 aa17.89■□□□□ 0.45
HMGN3-201ENST00000275036 ZDHHC15Q96MV8 337 aa17.89■□□□□ 0.45
HMGN3-201ENST00000275036 MYH2Q9UKX2 1941 aa17.89■□□□□ 0.45
HMGN3-201ENST00000275036 A0A1B0GUL7 405 aa17.88■□□□□ 0.45
HMGN3-201ENST00000275036 PRDX5P30044 214 aa17.88■□□□□ 0.45
HMGN3-201ENST00000275036 TM4SF4P48230 202 aa17.88■□□□□ 0.45
HMGN3-201ENST00000275036 ATP8B2P98198 1209 aa17.88■□□□□ 0.45
HMGN3-201ENST00000275036 SUPT20HL1Q3ZLR7 823 aa17.88■□□□□ 0.45
HMGN3-201ENST00000275036 CCDC102BQ68D86 513 aa17.88■□□□□ 0.45
HMGN3-201ENST00000275036 REM2Q8IYK8 340 aaPredicted RBP17.88■□□□□ 0.45
HMGN3-201ENST00000275036 SSH3Q8TE77 659 aa17.88■□□□□ 0.45
HMGN3-201ENST00000275036 MCOLN1Q9GZU1 580 aa17.88■□□□□ 0.45
HMGN3-201ENST00000275036 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.88■□□□□ 0.45
HMGN3-201ENST00000275036 GJA5P36382 358 aa17.87■□□□□ 0.45
HMGN3-201ENST00000275036 DIXDC1Q155Q3 683 aa17.87■□□□□ 0.45
HMGN3-201ENST00000275036 WDR66Q8TBY9 1149 aa17.87■□□□□ 0.45
HMGN3-201ENST00000275036 XAGE2Q96GT9 111 aa17.87■□□□□ 0.45
HMGN3-201ENST00000275036 MRIQ9BWK5 157 aa17.87■□□□□ 0.45
HMGN3-201ENST00000275036 SUGT1Q9Y2Z0 365 aa17.87■□□□□ 0.45
HMGN3-201ENST00000275036 PPP1R12BO60237 982 aaPredicted RBP17.86■□□□□ 0.45
HMGN3-201ENST00000275036 TBC1D8O95759 1140 aa17.86■□□□□ 0.45
HMGN3-201ENST00000275036 TNFAIP1Q13829 316 aa17.86■□□□□ 0.45
HMGN3-201ENST00000275036 WNK4Q96J92 1243 aa17.86■□□□□ 0.45
HMGN3-201ENST00000275036 GNL3LQ9NVN8 582 aaKnown RBP17.86■□□□□ 0.45
HMGN3-201ENST00000275036 ZBTB22O15209 634 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 MAST3O60307 1309 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 G3BP1Q13283 466 aaKnown RBP eCLIP17.85■□□□□ 0.45
HMGN3-201ENST00000275036 DGKZQ13574 1117 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 RASGRF1Q13972 1273 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 HHIPL2Q6UWX4 724 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 R3HDMLQ9H3Y0 253 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 SALL1Q9NSC2 1324 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 RCAN3Q9UKA8 241 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 DENND2AQ9ULE3 1009 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 AKAP2Q9Y2D5 859 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 DAGLAQ9Y4D2 1042 aa17.85■□□□□ 0.45
HMGN3-201ENST00000275036 SEMA3EO15041 775 aa17.84■□□□□ 0.45
HMGN3-201ENST00000275036 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.84■□□□□ 0.45
HMGN3-201ENST00000275036 PIAS4Q8N2W9 510 aaPredicted RBP17.84■□□□□ 0.45
HMGN3-201ENST00000275036 SLC10A4Q96EP9 437 aa17.84■□□□□ 0.45
HMGN3-201ENST00000275036 AK9Q5TCS8 1911 aa17.84■□□□□ 0.45
HMGN3-201ENST00000275036 MYO5AQ9Y4I1 1855 aaKnown RBP17.84■□□□□ 0.45
HMGN3-201ENST00000275036 ZBTB48P10074 688 aaPredicted RBP17.83■□□□□ 0.44
HMGN3-201ENST00000275036 IREB2P48200 963 aaKnown RBP17.83■□□□□ 0.44
HMGN3-201ENST00000275036 CEP85Q6P2H3 762 aa17.83■□□□□ 0.44
HMGN3-201ENST00000275036 ANKRD13AQ8IZ07 590 aa17.83■□□□□ 0.44
HMGN3-201ENST00000275036 CNKSR2Q8WXI2 1034 aa17.83■□□□□ 0.44
HMGN3-201ENST00000275036 NEUROD6Q96NK8 337 aa17.83■□□□□ 0.44
HMGN3-201ENST00000275036 ELP3Q9H9T3 547 aa17.83■□□□□ 0.44
HMGN3-201ENST00000275036 UNCXA6NJT0 531 aa17.82■□□□□ 0.44
HMGN3-201ENST00000275036 IGF2BP3O00425 579 aaKnown RBP eCLIP17.82■□□□□ 0.44
HMGN3-201ENST00000275036 TNNI2P48788 182 aa17.82■□□□□ 0.44
HMGN3-201ENST00000275036 SREBF2Q12772 1141 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms