RNA–Protein interactions for RNA: ENST00000250495.9

NEDD8-201, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD8, Length 708 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-201ENST00000250495 GPR25O00155 361 aa26.35■■□□□ 1.81
NEDD8-201ENST00000250495 EYA2O00167 538 aa26.35■■□□□ 1.81
NEDD8-201ENST00000250495 USP2O75604 605 aaPredicted RBP26.35■■□□□ 1.81
NEDD8-201ENST00000250495 BCAMP50895 628 aa26.35■■□□□ 1.81
NEDD8-201ENST00000250495 PUM3Q15397 648 aaKnown RBP26.35■■□□□ 1.81
NEDD8-201ENST00000250495 PKN2Q16513 984 aaKnown RBP26.35■■□□□ 1.81
NEDD8-201ENST00000250495 KIF16BQ96L93 1317 aa26.35■■□□□ 1.81
NEDD8-201ENST00000250495 SSC5DA1L4H1 1573 aa26.34■■□□□ 1.81
NEDD8-201ENST00000250495 RFX5P48382 616 aaPredicted RBP26.34■■□□□ 1.81
NEDD8-201ENST00000250495 TNNI2P48788 182 aa26.34■■□□□ 1.81
NEDD8-201ENST00000250495 ANKRD13AQ8IZ07 590 aa26.34■■□□□ 1.81
NEDD8-201ENST00000250495 WNK4Q96J92 1243 aa26.34■■□□□ 1.81
NEDD8-201ENST00000250495 CLMNQ96JQ2 1002 aa26.34■■□□□ 1.81
NEDD8-201ENST00000250495 MRIQ9BWK5 157 aa26.34■■□□□ 1.81
NEDD8-201ENST00000250495 NOB1Q9ULX3 412 aaKnown RBP26.34■■□□□ 1.81
NEDD8-201ENST00000250495 HDAC5Q9UQL6 1122 aa26.34■■□□□ 1.81
NEDD8-201ENST00000250495 UBTFL1P0CB47 393 aaPredicted RBP26.33■■□□□ 1.81
NEDD8-201ENST00000250495 FGFR2P21802 821 aa26.33■■□□□ 1.81
NEDD8-201ENST00000250495 API5Q9BZZ5 524 aaKnown RBP26.33■■□□□ 1.81
NEDD8-201ENST00000250495 GRIK5Q16478 980 aa26.32■■□□□ 1.8
NEDD8-201ENST00000250495 TEKT1Q969V4 418 aa26.32■■□□□ 1.8
NEDD8-201ENST00000250495 SUGT1Q9Y2Z0 365 aa26.32■■□□□ 1.8
NEDD8-201ENST00000250495 ARAP2Q8WZ64 1704 aa26.31■■□□□ 1.8
NEDD8-201ENST00000250495 TCP10L2B9ZVM9 353 aa26.31■■□□□ 1.8
NEDD8-201ENST00000250495 SLC5A1P13866 664 aa26.31■■□□□ 1.8
NEDD8-201ENST00000250495 LPIN2Q92539 896 aa26.31■■□□□ 1.8
NEDD8-201ENST00000250495 FBXO3Q9UK99 471 aa26.31■■□□□ 1.8
NEDD8-201ENST00000250495 FKTNO75072 461 aa26.3■■□□□ 1.8
NEDD8-201ENST00000250495 IFNL1Q8IU54 200 aa26.3■■□□□ 1.8
NEDD8-201ENST00000250495 OTUD7BQ6GQQ9 843 aa26.29■■□□□ 1.8
NEDD8-201ENST00000250495 TEPSINQ96N21 525 aa26.29■■□□□ 1.8
NEDD8-201ENST00000250495 MAST3O60307 1309 aa26.29■■□□□ 1.8
NEDD8-201ENST00000250495 ATG9AQ7Z3C6 839 aa26.28■■□□□ 1.8
NEDD8-201ENST00000250495 CIAO1O76071 339 aa26.27■■□□□ 1.8
NEDD8-201ENST00000250495 WDR66Q8TBY9 1149 aa26.27■■□□□ 1.8
NEDD8-201ENST00000250495 ZDHHC15Q96MV8 337 aa26.27■■□□□ 1.8
NEDD8-201ENST00000250495 TMEM39BQ9GZU3 492 aa26.27■■□□□ 1.8
NEDD8-201ENST00000250495 R3HDMLQ9H3Y0 253 aa26.27■■□□□ 1.8
NEDD8-201ENST00000250495 TMOD2Q9NZR1 351 aa26.27■■□□□ 1.8
NEDD8-201ENST00000250495 CEP126Q9P2H0 1117 aa26.27■■□□□ 1.8
NEDD8-201ENST00000250495 HHIPL2Q6UWX4 724 aa26.26■■□□□ 1.79
NEDD8-201ENST00000250495 HPS5Q9UPZ3 1129 aa26.26■■□□□ 1.79
NEDD8-201ENST00000250495 RARSP54136 660 aaKnown RBP26.25■■□□□ 1.79
NEDD8-201ENST00000250495 MAP3K9P80192 1104 aa26.25■■□□□ 1.79
NEDD8-201ENST00000250495 SIL1Q9H173 461 aa26.25■■□□□ 1.79
NEDD8-201ENST00000250495 ELP3Q9H9T3 547 aa26.25■■□□□ 1.79
NEDD8-201ENST00000250495 IGF2BP3O00425 579 aaKnown RBP eCLIP26.24■■□□□ 1.79
NEDD8-201ENST00000250495 GJA5P36382 358 aa26.24■■□□□ 1.79
NEDD8-201ENST00000250495 FKBP1CQ5VVH2 108 aa26.24■■□□□ 1.79
NEDD8-201ENST00000250495 FAM83AQ86UY5 434 aa26.24■■□□□ 1.79
NEDD8-201ENST00000250495 ARHGAP45Q92619 1136 aa26.24■■□□□ 1.79
NEDD8-201ENST00000250495 OPTNQ96CV9 577 aa26.24■■□□□ 1.79
NEDD8-201ENST00000250495 GNL3LQ9NVN8 582 aaKnown RBP26.24■■□□□ 1.79
NEDD8-201ENST00000250495 LRRFIP2Q9Y608 721 aaKnown RBP26.24■■□□□ 1.79
NEDD8-201ENST00000250495 TESPA1A2RU30 521 aaPredicted RBP26.23■■□□□ 1.79
NEDD8-201ENST00000250495 IL15P40933 162 aaPredicted RBP26.23■■□□□ 1.79
NEDD8-201ENST00000250495 ATP2B3Q16720 1220 aa26.23■■□□□ 1.79
NEDD8-201ENST00000250495 APOBEC3HQ6NTF7 200 aaKnown RBP26.23■■□□□ 1.79
NEDD8-201ENST00000250495 FBXO46Q6PJ61 603 aaPredicted RBP26.23■■□□□ 1.79
NEDD8-201ENST00000250495 CDAN1Q8IWY9 1227 aa26.23■■□□□ 1.79
NEDD8-201ENST00000250495 HOOK2Q96ED9 719 aa26.23■■□□□ 1.79
NEDD8-201ENST00000250495 CACNB3P54284 484 aa26.22■■□□□ 1.79
NEDD8-201ENST00000250495 SOX10P56693 466 aa26.22■■□□□ 1.79
NEDD8-201ENST00000250495 PPP1R3FQ6ZSY5 799 aaPredicted RBP26.22■■□□□ 1.79
NEDD8-201ENST00000250495 CSADQ9Y600 493 aa26.22■■□□□ 1.79
NEDD8-201ENST00000250495 COPRSQ9NQ92 184 aa26.21■■□□□ 1.79
NEDD8-201ENST00000250495 LAMB1P07942 1786 aa26.2■■□□□ 1.79
NEDD8-201ENST00000250495 INTS3Q68E01 1043 aaKnown RBP26.2■■□□□ 1.78
NEDD8-201ENST00000250495 DDX55Q8NHQ9 600 aaKnown RBP eCLIP26.2■■□□□ 1.783e-11■■□□□ 12.5
NEDD8-201ENST00000250495 GNAI3P08754 354 aa26.19■■□□□ 1.78
NEDD8-201ENST00000250495 VGLL4Q14135 290 aa26.19■■□□□ 1.78
NEDD8-201ENST00000250495 MEIS3Q99687 375 aa26.19■■□□□ 1.78
NEDD8-201ENST00000250495 MYH13Q9UKX3 1938 aa26.19■■□□□ 1.78
NEDD8-201ENST00000250495 IPO8O15397 1037 aaKnown RBP26.18■■□□□ 1.78
NEDD8-201ENST00000250495 GTF2A2P52657 109 aa26.18■■□□□ 1.78
NEDD8-201ENST00000250495 PTPN18Q99952 460 aa26.18■■□□□ 1.78
NEDD8-201ENST00000250495 DENND2AQ9ULE3 1009 aa26.18■■□□□ 1.78
NEDD8-201ENST00000250495 PA2G4Q9UQ80 394 aaKnown RBP26.18■■□□□ 1.78
NEDD8-201ENST00000250495 OTOFQ9HC10 1997 aa26.17■■□□□ 1.78
NEDD8-201ENST00000250495 SEMA3EO15041 775 aa26.17■■□□□ 1.78
NEDD8-201ENST00000250495 CRHR2Q13324 411 aa26.17■■□□□ 1.78
NEDD8-201ENST00000250495 DCAF15Q66K64 600 aa26.17■■□□□ 1.78
NEDD8-201ENST00000250495 ERO1AQ96HE7 468 aa26.17■■□□□ 1.78
NEDD8-201ENST00000250495 MS4A4AQ96JQ5 239 aa26.17■■□□□ 1.78
NEDD8-201ENST00000250495 LDHBP07195 334 aaKnown RBP26.16■■□□□ 1.78
NEDD8-201ENST00000250495 TRIM17Q9Y577 477 aa26.16■■□□□ 1.78
NEDD8-201ENST00000250495 ZBTB22O15209 634 aa26.15■■□□□ 1.78
NEDD8-201ENST00000250495 FAM151AQ8WW52 585 aa26.15■■□□□ 1.78
NEDD8-201ENST00000250495 CNKSR2Q8WXI2 1034 aa26.15■■□□□ 1.78
NEDD8-201ENST00000250495 SALL1Q9NSC2 1324 aa26.14■■□□□ 1.78
NEDD8-201ENST00000250495 CCL15-CCL14A0A0B4J2E2 113 aa26.14■■□□□ 1.78
NEDD8-201ENST00000250495 PRDX5P30044 214 aa26.14■■□□□ 1.78
NEDD8-201ENST00000250495 PHKA1P46020 1223 aa26.14■■□□□ 1.78
NEDD8-201ENST00000250495 CCL15Q16663 113 aa26.14■■□□□ 1.78
NEDD8-201ENST00000250495 ERO1BQ86YB8 467 aa26.14■■□□□ 1.78
NEDD8-201ENST00000250495 OTUD5Q96G74 571 aa26.14■■□□□ 1.78
NEDD8-201ENST00000250495 WRNIP1Q96S55 665 aa26.14■■□□□ 1.78
NEDD8-201ENST00000250495 DAGLAQ9Y4D2 1042 aa26.14■■□□□ 1.78
NEDD8-201ENST00000250495 RPAP1Q9BWH6 1393 aaPredicted RBP26.13■■□□□ 1.77
NEDD8-201ENST00000250495 SPDYE5A6NIY4 337 aa26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms