RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ZNF569Q5MCW4 686 aa15.29■□□□□ 0.04
SF3A1-201ENST00000215793 CCDC65Q8IXS2 484 aa15.29■□□□□ 0.04
SF3A1-201ENST00000215793 LZTFL1Q9NQ48 299 aa15.29■□□□□ 0.04
SF3A1-201ENST00000215793 MTRF1LQ9UGC7 380 aaKnown RBP15.29■□□□□ 0.04
SF3A1-201ENST00000215793 PPM1FP49593 454 aaPredicted RBP15.29■□□□□ 0.04
SF3A1-201ENST00000215793 LLPHQ9BRT6 129 aaKnown RBP15.29■□□□□ 0.04
SF3A1-201ENST00000215793 ZNF518AQ6AHZ1 1483 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 PCDH11XQ9BZA7 1347 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 PCDH11YQ9BZA8 1340 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 SPATA24Q86W54 205 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 PAIP2Q9BPZ3 127 aaKnown RBP15.28■□□□□ 0.04
SF3A1-201ENST00000215793 MBD4O95243 580 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 PARP1P09874 1014 aaKnown RBP15.28■□□□□ 0.04
SF3A1-201ENST00000215793 TSGA10Q9BZW7 698 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 RSPH14Q9UHP6 348 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 TRPM2O94759 1503 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 WDR7Q9Y4E6 1490 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 AOX1Q06278 1338 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 ATP2C2O75185 946 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 DEXIO95424 95 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 RPS6KB1P23443 525 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 CCDC6Q16204 474 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 SV2BQ7L1I2 683 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 MTUS1Q9ULD2 1270 aa15.28■□□□□ 0.04
SF3A1-201ENST00000215793 EIF2AK4Q9P2K8 1649 aaKnown RBP15.27■□□□□ 0.04
SF3A1-201ENST00000215793 TEX14Q8IWB6 1497 aa15.27■□□□□ 0.04
SF3A1-201ENST00000215793 HOXC9P31274 260 aa15.27■□□□□ 0.04
SF3A1-201ENST00000215793 UGGT2Q9NYU1 1516 aa15.27■□□□□ 0.04
SF3A1-201ENST00000215793 MAP3K19Q56UN5 1328 aa15.27■□□□□ 0.04
SF3A1-201ENST00000215793 ATP10BO94823 1461 aa15.27■□□□□ 0.04
SF3A1-201ENST00000215793 AKR1B15C9JRZ8 316 aaPredicted RBP15.27■□□□□ 0.04
SF3A1-201ENST00000215793 CAPN2P17655 700 aa15.27■□□□□ 0.04
SF3A1-201ENST00000215793 KARSQ15046 597 aaKnown RBP15.27■□□□□ 0.04
SF3A1-201ENST00000215793 CARD14Q9BXL6 1004 aa15.27■□□□□ 0.04
SF3A1-201ENST00000215793 VEZTQ9HBM0 779 aa15.27■□□□□ 0.04
SF3A1-201ENST00000215793 MXRA7P84157 204 aa15.27■□□□□ 0.03
SF3A1-201ENST00000215793 PTPRKQ15262 1439 aa15.27■□□□□ 0.03
SF3A1-201ENST00000215793 PARP10Q53GL7 1025 aa15.27■□□□□ 0.03
SF3A1-201ENST00000215793 KIAA1524Q8TCG1 905 aa15.27■□□□□ 0.03
SF3A1-201ENST00000215793 SH2D4AQ9H788 454 aa15.27■□□□□ 0.03
SF3A1-201ENST00000215793 SYT10Q6XYQ8 523 aa15.27■□□□□ 0.03
SF3A1-201ENST00000215793 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.27■□□□□ 0.03
SF3A1-201ENST00000215793 PLBD2Q8NHP8 589 aa15.27■□□□□ 0.03
SF3A1-201ENST00000215793 BAG1Q99933 345 aaPredicted RBP15.27■□□□□ 0.03
SF3A1-201ENST00000215793 EBAG9O00559 213 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 TRIM14Q14142 442 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 JAKMIP2Q96AA8 810 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 SMC6Q96SB8 1091 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 A0A1W2PP64 1363 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 ABCC1P33527 1531 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 A0A1B0GVL5 298 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 VWA3AA6NCI4 1184 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 ZBTB16Q05516 673 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 CALCOCO2Q13137 446 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 CCDC50Q8IVM0 306 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 A0A1B0GUL7 405 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 ATP2A2P16615 1042 aaKnown RBP15.26■□□□□ 0.03
SF3A1-201ENST00000215793 RXRAP19793 462 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 CAPZA3Q96KX2 299 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 PSMD1Q99460 953 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 GJC1P36383 396 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 VWA3BQ502W6 1294 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 CCDC122Q5T0U0 273 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 JDP2Q8WYK2 163 aa15.26■□□□□ 0.03
SF3A1-201ENST00000215793 GLT8D2Q9H1C3 349 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.25■□□□□ 0.03
SF3A1-201ENST00000215793 V9GYY5 206 aaPredicted RBP15.25■□□□□ 0.03
SF3A1-201ENST00000215793 ZNF608Q9ULD9 1512 aaPredicted RBP15.25■□□□□ 0.03
SF3A1-201ENST00000215793 APPBP2Q92624 585 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 SH3TC1Q8TE82 1336 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 CABLES1Q8TDN4 633 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 PPP1R9BQ96SB3 815 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 METTL22Q9BUU2 404 aaPredicted RBP15.25■□□□□ 0.03
SF3A1-201ENST00000215793 TRAF5O00463 557 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 LETM2Q2VYF4 491 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 TNNI3KQ59H18 835 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 ZHX1Q9UKY1 873 aaPredicted RBP15.25■□□□□ 0.03
SF3A1-201ENST00000215793 ANGEL1Q9UNK9 670 aaKnown RBP15.25■□□□□ 0.03
SF3A1-201ENST00000215793 FRMD4BQ9Y2L6 1034 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 PARP3Q9Y6F1 533 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 FPGT-TNNI3KV9GXZ4 949 aa15.25■□□□□ 0.03
SF3A1-201ENST00000215793 TBC1D8BQ0IIM8 1120 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 ANO1Q5XXA6 986 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 ZNF354CQ86Y25 554 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 IPO4Q8TEX9 1081 aaKnown RBP15.24■□□□□ 0.03
SF3A1-201ENST00000215793 TMEM110-MUSTN1A8MSY1 372 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 PUM3Q15397 648 aaKnown RBP15.24■□□□□ 0.03
SF3A1-201ENST00000215793 CERS3Q8IU89 383 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 TXNDC16Q9P2K2 825 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 MAPKBP1O60336 1514 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 TIMM10P62072 90 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 TUBB2AQ13885 445 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 PPP2R5BQ15173 497 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 ZNF790Q6PG37 636 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 CCDC121Q6ZUS5 278 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 TEX11Q8IYF3 940 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 TUBB2BQ9BVA1 445 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 ZNF174Q15697 407 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 CFAP58Q5T655 872 aa15.24■□□□□ 0.03
SF3A1-201ENST00000215793 MSL1Q68DK7 614 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms