RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 CHST1O43916 411 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 SPDEFO95238 335 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 TMEM50AO95807 157 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 PVALBP20472 110 aaPredicted RBP13.72□□□□□ -0.21
CLN3-252ENST00000636907 COX7A1P24310 79 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 COL8A1P27658 744 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 REG1BP48304 166 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 ZNF137PP52743 207 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 ATP5J2P56134 94 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 FAM71F2Q6NXP2 309 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 SSX9Q7RTT3 188 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 VKORC1L1Q8N0U8 176 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 TNFRSF14Q92956 283 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 CLEC7AQ9BXN2 247 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 CYTL1Q9NRR1 136 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 GPR137BO60478 399 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 IFNA7P01567 189 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 IGLV1-47P01700 117 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 MMP9P14780 707 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 NQO2P16083 231 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 PAX9P55771 341 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 LMO4P61968 165 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 UBA52P62987 128 aaKnown RBP13.72□□□□□ -0.21
CLN3-252ENST00000636907 VAMP2P63027 116 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 OR2C3Q8N628 320 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 ST8SIA2Q92186 375 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 CTNNBIP1Q9NSA3 81 aaPredicted RBP13.72□□□□□ -0.21
CLN3-252ENST00000636907 SLC35D1Q9NTN3 355 aa13.72□□□□□ -0.21
CLN3-252ENST00000636907 FAM24AA6NFZ4 105 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 M0R1W7 72 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 OR9G9P0C7N8 305 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 IL3RAP26951 378 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 PRRX1P54821 245 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 HLA-DRB5Q30154 266 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 GPR157Q5UAW9 335 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 CLEC9AQ6UXN8 241 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 FAM168AQ92567 244 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 BSCL2Q96G97 398 aaPredicted RBP13.71□□□□□ -0.21
CLN3-252ENST00000636907 NABP2Q9BQ15 211 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 SIRT7Q9NRC8 400 aa13.71□□□□□ -0.21
CLN3-252ENST00000636907 LYRM2Q9NU23 88 aaPredicted RBP13.71□□□□□ -0.21
CLN3-252ENST00000636907 ARHGAP32A7KAX9 2087 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 A8MXK9 166 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 FAM90A26D6RGX4 464 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 H0YJW9 148 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 SYNGR2O43760 224 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 CAV2P51636 162 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 ERVK-16P61578 105 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 RTL8BQ17RB0 113 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 PNKDQ8N490 385 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 BEND2Q8NDZ0 799 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 C10orf105Q8TEF2 133 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 PIMREGQ9BSJ6 248 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 BARX1Q9HBU1 254 aaPredicted RBP13.7□□□□□ -0.22
CLN3-252ENST00000636907 HSPB7Q9UBY9 170 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 FBXL17Q9UF56 701 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 UBQLN2Q9UHD9 624 aa13.7□□□□□ -0.22
CLN3-252ENST00000636907 IGSF23A1L1A6 192 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 FAM90A9PA6NNJ1 464 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 J3QKU1 62 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 ENSAO43768 121 aaKnown RBP13.69□□□□□ -0.22
CLN3-252ENST00000636907 IGKV1-16P04430 117 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 HTR2BP41595 481 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 LCN2P80188 198 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 PAX2Q02962 417 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 TNFRSF9Q07011 255 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 DHRS7BQ6IAN0 325 aaPredicted RBP13.69□□□□□ -0.22
CLN3-252ENST00000636907 TGIF2LXQ8IUE1 241 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 OR5AN1Q8NGI8 311 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 PERPQ96FX8 193 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 RAB40CQ96S21 281 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 SMIM3Q9BZL3 60 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 RBKSQ9H477 322 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 TMEM140Q9NV12 185 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 RBMXL2O75526 392 aaKnown RBP13.69□□□□□ -0.22
CLN3-252ENST00000636907 APOA2P02652 100 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 IAPPP10997 89 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 OR2B8PP59922 312 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 EWSR1Q01844 656 aaKnown RBP eCLIP13.69□□□□□ -0.22
CLN3-252ENST00000636907 NHLH2Q02577 135 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 ALKAL2Q6UX46 152 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 KIR3DL3Q8N743 410 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 OR4P4Q8NGL7 312 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 OR13D1Q8NGV5 346 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 RHOVQ96L33 236 aa13.69□□□□□ -0.22
CLN3-252ENST00000636907 TRAV3A0A0B4J244 114 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 VWC2LB2RUY7 222 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 BUB1B-PAK6H3BSN5 160 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 NDUFS8O00217 210 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 TAAR5O14804 337 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 HRASP01112 189 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 RRASP10301 218 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 PRTN3P24158 256 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 ARHGDIBP52566 201 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 UBE2KP61086 200 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 RELBQ01201 579 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 TAGLNQ01995 201 aaKnown RBP13.68□□□□□ -0.22
CLN3-252ENST00000636907 POU2AF1Q16633 256 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 CLEC2AQ6UVW9 174 aa13.68□□□□□ -0.22
CLN3-252ENST00000636907 OR8H3Q8N146 312 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms