RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 IGHV4-4A0A075B6R2 117 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 A8MWP6 167 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 C11orf94C9JXX5 98 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 MPPED1O15442 326 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 OR2J3O76001 311 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 IGHV3-23P01764 117 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 APOA2P02652 100 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 FUT3P21217 361 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 BDKRB2P30411 391 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 C15orf32Q32M92 178 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 POM121L12Q8N7R1 296 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 TSPAN14Q8NG11 270 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 OR8J1Q8NGP2 316 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 OR5B3Q8NH48 314 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 OR14A2Q96R54 314 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 SELENOIQ9C0D9 397 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 C11orf54Q9H0W9 315 aaPredicted RBP10.64□□□□□ -0.71
CLN3-249ENST00000636685 SCRT2Q9NQ03 307 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 ABRACLQ9P1F3 81 aa10.64□□□□□ -0.71
CLN3-249ENST00000636685 EXOSC1Q9Y3B2 195 aaKnown RBP10.64□□□□□ -0.71
CLN3-249ENST00000636685 A0A087WXM4 84 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 FAM90A7PA6NKC0 464 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 C16orf90A8MZG2 172 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 G3V2T6 193 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 GLAP06280 429 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 SMIM18P0DKX4 95 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 POLR2IP36954 125 aaKnown RBP10.63□□□□□ -0.71
CLN3-249ENST00000636685 PPP3R1P63098 170 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 GPR176Q14439 515 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 LGALS9BQ3B8N2 356 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 KCTD21Q4G0X4 260 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 TTC23Q5W5X9 447 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 LHFPL3Q86UP9 236 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 ACBD7Q8N6N7 88 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 NECAP1Q8NC96 275 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 GALNT14Q96FL9 552 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 SLC35D1Q9NTN3 355 aa10.63□□□□□ -0.71
CLN3-249ENST00000636685 ARL3P36405 182 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 MAP2K4P45985 399 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 MED22Q15528 200 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 TNXAQ16473 311 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 FAM106AQ4KMX7 169 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 ZNF585BQ52M93 769 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 KDM4DQ6B0I6 523 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 GLIPR1L1Q6UWM5 242 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 CYGBQ8WWM9 190 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 SRSF12Q8WXF0 261 aaKnown RBP10.62□□□□□ -0.71
CLN3-249ENST00000636685 MUL1Q969V5 352 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 HARBI1Q96MB7 349 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 SPAG8Q99932 426 aaPredicted RBP10.62□□□□□ -0.71
CLN3-249ENST00000636685 S4R3C0 116 aa10.62□□□□□ -0.71
CLN3-249ENST00000636685 SRRM4A7MD48 611 aaKnown RBP10.61□□□□□ -0.71
CLN3-249ENST00000636685 EI24O14681 340 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 ITGB1BP1O14713 200 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 PDCD6O75340 191 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 CD2P06729 351 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 C8orf88P0DMB2 117 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 MGMTP16455 207 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 FAM209BQ5JX69 171 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 OR4A47Q6IF82 309 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 CLEC19AQ6UXS0 136 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 C19orf35Q6ZS72 473 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 ZNF555Q8NEP9 628 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 CCDC140Q96MF4 163 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 CSTL1Q9H114 145 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 OR1A1Q9P1Q5 309 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 ORC6Q9Y5N6 252 aa10.61□□□□□ -0.71
CLN3-249ENST00000636685 MPTX1A8MV57 137 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 M0R1X1 148 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 CRTAPO75718 401 aaPredicted RBP10.6□□□□□ -0.71
CLN3-249ENST00000636685 SCTP09683 121 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 CEACAM6P40199 344 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 CNPY1Q3B7I2 92 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 PVRIGQ6DKI7 326 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 UNQ9165/PRO28630Q6UXU0 137 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 APRG1Q8IVJ8 170 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 SYS1Q8N2H4 156 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 OR4A5Q8NH83 315 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 CD300LFQ8TDQ1 290 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 GPR148Q8TDV2 347 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 Q96M66 194 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 VCX3AQ9NNX9 186 aa10.6□□□□□ -0.71
CLN3-249ENST00000636685 IGLV2-18A0A075B6J9 118 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 ALPLP05186 524 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 HLA-DMBP28068 263 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 ALDH3B2P48448 385 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 ZNF124Q15973 351 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 PRSS8Q16651 343 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 RBM48Q5RL73 367 aaKnown RBP10.59□□□□□ -0.71
CLN3-249ENST00000636685 IDO2Q6ZQW0 420 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 Q6ZTC4 211 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 NR2C2APQ86WQ0 139 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 SVOPQ8N4V2 548 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 TTC9CQ8N5M4 171 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 SETD6Q8TBK2 473 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 ACOT12Q8WYK0 555 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 MRPL48Q96GC5 212 aaKnown RBP10.59□□□□□ -0.71
CLN3-249ENST00000636685 C5orf66Q9H5L9 145 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 ZNF221Q9UK13 617 aa10.59□□□□□ -0.71
CLN3-249ENST00000636685 EXOGQ9Y2C4 368 aaKnown RBP10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms