RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 MKRN2OSH3BPM6 223 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 M0R2Z0 102 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 S100A7P31151 101 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 UCP2P55851 309 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 TRAT1Q6PIZ9 186 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 ZNF826PQ6ZT77 177 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 CPEB3Q8NE35 698 aaKnown RBP9.37□□□□□ -0.91
CLN3-244ENST00000636147 MIEN1Q9BRT3 115 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 NPCDR1Q9BY65 106 aa9.37□□□□□ -0.91
CLN3-244ENST00000636147 NUP210Q8TEM1 1887 aaPredicted RBP9.36□□□□□ -0.91
CLN3-244ENST00000636147 TRAV1-1A0A0B4J248 108 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 IGHV5-10-1A0A0J9YXX1 117 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 RFPL3SP0C7P2 107 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 SRIP30626 198 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 PAX9P55771 341 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 RPL31P62899 125 aaKnown RBP9.36□□□□□ -0.91
CLN3-244ENST00000636147 ZNF726P1Q15940 193 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 RSPO1Q2MKA7 263 aaPredicted RBP9.36□□□□□ -0.91
CLN3-244ENST00000636147 C1orf194Q5T5A4 169 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 WDR74Q6RFH5 385 aaPredicted RBP9.36□□□□□ -0.91
CLN3-244ENST00000636147 DOLPP1Q86YN1 238 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 ABHD12Q8N2K0 398 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 TECRQ9NZ01 308 aaKnown RBP9.36□□□□□ -0.91
CLN3-244ENST00000636147 EML5Q05BV3 1969 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 J3QT63 122 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 TOX4O94842 621 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 USF1P22415 310 aaPredicted RBP9.36□□□□□ -0.91
CLN3-244ENST00000636147 TDGF1P3P51864 188 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 LCN2P80188 198 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 DTX1Q86Y01 620 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 MMD2Q8IY49 270 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 LSM10Q969L4 123 aaKnown RBP9.36□□□□□ -0.91
CLN3-244ENST00000636147 POLR3KQ9Y2Y1 108 aaPredicted RBP9.36□□□□□ -0.91
CLN3-244ENST00000636147 TBL2Q9Y4P3 447 aaKnown RBP9.36□□□□□ -0.91
CLN3-244ENST00000636147 MPC1Q9Y5U8 109 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 RAMP3O60896 148 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 SCRT1Q9BWW7 348 aa9.36□□□□□ -0.91
CLN3-244ENST00000636147 INTS1Q8N201 2190 aaKnown RBP9.36□□□□□ -0.91
CLN3-244ENST00000636147 IGHEP01854 428 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 BTF3P20290 206 aaKnown RBP9.35□□□□□ -0.91
CLN3-244ENST00000636147 DUSP3P51452 185 aaPredicted RBP9.35□□□□□ -0.91
CLN3-244ENST00000636147 MFAP2P55001 183 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 PQLC2Q6ZP29 291 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 ZIC4Q8N9L1 334 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 OR4B1Q8NGF8 309 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 FAM216AQ8WUB2 273 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 UQCR10Q9UDW1 63 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 WASHC3Q9Y3C0 194 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 HAND1O96004 215 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 UBE2G1P62253 170 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 RBMXL3Q8N7X1 1067 aaKnown RBP9.35□□□□□ -0.91
CLN3-244ENST00000636147 ZNF738Q8NE65 137 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 A0A1W2PR77 199 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 LRRC30A6NM36 301 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 GALR2O43603 387 aaPredicted RBP9.35□□□□□ -0.91
CLN3-244ENST00000636147 VENTXO95231 258 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 CXorf1O96002 111 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 IGKV1-5P01602 117 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 CSN3P07498 182 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 CRYGSP22914 178 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 CRYBB3P26998 211 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 HIST3H3Q16695 136 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 CARFQ8N187 725 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 ST6GALNAC6Q969X2 333 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 TRIB1Q96RU8 372 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 DIRC2Q96SL1 478 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 SSBP3Q9BWW4 388 aaPredicted RBP9.35□□□□□ -0.91
CLN3-244ENST00000636147 DEPPQ9NTK1 212 aa9.35□□□□□ -0.91
CLN3-244ENST00000636147 PCDH15Q96QU1 1955 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 A0A0G2JMM0 328 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 A0A1W2PPB8 328 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 A0A1W2PRS3 328 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 C17orf98A8MV24 154 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 KIR3DP1A8MWS1 328 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 LYZL6O75951 148 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 HBZP02008 142 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 TCTAP57738 103 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 PRR31Q5SQ13 230 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 PRR14LQ5THK1 2151 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 PCNX1Q96RV3 2341 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 SOX8P57073 446 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 DCAF12Q5T6F0 453 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 LEMD1Q68G75 181 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 C20orf204Q6ZNR8 217 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 SH2D2AQ9NP31 389 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 GTF3C1Q12789 2109 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 IGKV1-6A0A0C4DH72 117 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A10PA6NDY2 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A18PA6NE21 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A16PA6NEW6 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A20PA6NIJ5 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A8PA6NJQ4 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A7PA6NKC0 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 MARCH11A6NNE9 402 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A22PA8MWA6 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A12PA8MX19 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A5PA8MXJ8 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A23PA8MXZ1 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A15PP0C7V4 464 aa9.34□□□□□ -0.91
CLN3-244ENST00000636147 FAM90A13PP0C7W8 464 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms