RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 GNG3P63215 75 aa11.83□□□□□ -0.51
LDB3-209ENST00000623056 CCL7P80098 99 aa11.83□□□□□ -0.51
LDB3-209ENST00000623056 IGFBP7Q16270 282 aa11.83□□□□□ -0.51
LDB3-209ENST00000623056 TMEM249Q2WGJ8 235 aa11.83□□□□□ -0.51
LDB3-209ENST00000623056 NRN1LQ496H8 165 aa11.83□□□□□ -0.51
LDB3-209ENST00000623056 WIPI1Q5MNZ9 446 aaPredicted RBP11.83□□□□□ -0.51
LDB3-209ENST00000623056 SPEM1Q8N4L4 309 aa11.83□□□□□ -0.51
LDB3-209ENST00000623056 C11orf42Q8N5U0 333 aa11.83□□□□□ -0.51
LDB3-209ENST00000623056 OCC1Q8TAD7 63 aa11.83□□□□□ -0.51
LDB3-209ENST00000623056 SAMD10Q9BYL1 202 aa11.83□□□□□ -0.51
LDB3-209ENST00000623056 RNF114Q9Y508 228 aa11.83□□□□□ -0.51
LDB3-209ENST00000623056 TRAPPC6AO75865 159 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 S1PR2O95136 353 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 RAB1CQ92928 201 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 TMEM204Q9BSN7 226 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 WDR54Q9H977 334 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 CHODLQ9H9P2 273 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 DNAJC4Q9NNZ3 241 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 OCIAD1Q9NX40 245 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 FBXL7Q9UJT9 491 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 FREM1Q5H8C1 2179 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 ESPL1Q14674 2120 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 USF3Q68DE3 2245 aa11.83□□□□□ -0.52
LDB3-209ENST00000623056 SCO2A0A1W2PP80 73 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 LNP1A1A4G5 178 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 OR5B21A6NL26 309 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 ANKRD30BLA7E2S9 258 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 CHRNB4P30926 498 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 EDDM3BP56851 147 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 TRA2AQ13595 282 aaKnown RBP eCLIP11.82□□□□□ -0.52
LDB3-209ENST00000623056 TMPRSS7Q7RTY8 843 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 ZNF645Q8N7E2 425 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 C5orf30Q96GV9 206 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 CIB3Q96Q77 187 aaPredicted RBP11.82□□□□□ -0.52
LDB3-209ENST00000623056 QTRT1Q9BXR0 403 aaKnown RBP11.82□□□□□ -0.52
LDB3-209ENST00000623056 IL36BQ9NZH7 164 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 WIPI2Q9Y4P8 454 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 FRYLO94915 3013 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 A0A1W2PPV4 95 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 SLC17A3O00476 420 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 OR2H2O95918 312 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 HLA-DRB5Q30154 266 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 FBXW9Q5XUX1 488 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 ZNF808Q8N4W9 903 aaPredicted RBP11.82□□□□□ -0.52
LDB3-209ENST00000623056 AGBL5Q8NDL9 886 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 OR4B1Q8NGF8 309 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 OR1L6Q8NGR2 347 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 MSL2Q9HCI7 577 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 WDR83OSQ9Y284 106 aa11.82□□□□□ -0.52
LDB3-209ENST00000623056 TRAV9-1A0A075B6T8 112 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 MRPL33O75394 65 aaKnown RBP11.81□□□□□ -0.52
LDB3-209ENST00000623056 ARL14EPLP0DKL9 152 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 FOXG1P55316 489 aaPredicted RBP11.81□□□□□ -0.52
LDB3-209ENST00000623056 Q0VG73 95 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 MMDQ15546 238 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 Q8N976 141 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 MAFAQ8NHW3 353 aaPredicted RBP11.81□□□□□ -0.52
LDB3-209ENST00000623056 TMEM45BQ96B21 275 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 SLC35E1Q96K37 410 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 PKIBQ9C010 78 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 OR2D2Q9H210 308 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 PPIAL4AQ9Y536 164 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 CEP192Q8TEP8 1941 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 K7ESF4 209 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 FCN1O00602 326 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 FRMD6-AS1P0C7T7 363 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 BRWD1-AS2P59051 145 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 KRTDAPP60985 99 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 ANKRD39Q53RE8 183 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 KRTCAP3Q53RY4 240 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 SIGLECL1Q8N7X8 197 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 FAM103A1Q9BTL3 118 aaKnown RBP11.81□□□□□ -0.52
LDB3-209ENST00000623056 LRFN3Q9BTN0 628 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 ASCL3Q9NQ33 180 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 MBNL3Q9NUK0 354 aaKnown RBP11.81□□□□□ -0.52
LDB3-209ENST00000623056 MPC1Q9Y5U8 109 aa11.81□□□□□ -0.52
LDB3-209ENST00000623056 C15orf62A8K5M9 175 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 C17orf98A8MV24 154 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 J3QT63 122 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 RBMXL2O75526 392 aaKnown RBP11.8□□□□□ -0.52
LDB3-209ENST00000623056 P04436 131 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 CD1BP29016 333 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 CTRLP40313 264 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 IER3P46695 156 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 CXCL12P48061 93 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 PSG7Q13046 419 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 MCEMP1Q8IX19 187 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 GMPPAQ96IJ6 420 aaPredicted RBP11.8□□□□□ -0.52
LDB3-209ENST00000623056 TXNDC17Q9BRA2 123 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 FOXJ2Q9P0K8 574 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 YLPM1P49750 1951 aaKnown RBP11.8□□□□□ -0.52
LDB3-209ENST00000623056 CUL9Q8IWT3 2517 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 WDFY4Q6ZS81 3184 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 DIRC3C9JPN6 131 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 K7EN84 100 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 CLDN14O95500 239 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 CA6P23280 308 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 LGALS4P56470 323 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 GTF3C1Q12789 2109 aa11.8□□□□□ -0.52
LDB3-209ENST00000623056 EIF4EBP1Q13541 118 aaPredicted RBP11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms