RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 M0R036 132 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 NDUFA2O43678 99 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 DFFBO76075 338 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 ATP5J2P56134 94 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 MARC2Q969Z3 335 aa13.04□□□□□ -0.32
CPSF1-213ENST00000620219 PRRX1P54821 245 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 LCN15Q6UWW0 184 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 CABLES2Q9BTV7 478 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.03□□□□□ -0.32
CPSF1-213ENST00000620219 UBE2KP61086 200 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 RAB11AP62491 216 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 LCN2P80188 198 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 ZNF788Q6ZQV5 615 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 TMEM252Q8N6L7 170 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 RFNGQ9Y644 331 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 TNCP24821 2201 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 NCBP2LA6PVI3 153 aaKnown RBP13.03□□□□□ -0.32
CPSF1-213ENST00000620219 PERPQ96FX8 193 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 SH3BGRL3Q9H299 93 aa13.03□□□□□ -0.32
CPSF1-213ENST00000620219 NEIL1Q96FI4 390 aaPredicted RBP13.03□□□□□ -0.32
CPSF1-213ENST00000620219 MBNL3Q9NUK0 354 aaKnown RBP13.03□□□□□ -0.32
CPSF1-213ENST00000620219 A0A0G2JRQ6 117 aa13.02□□□□□ -0.32
CPSF1-213ENST00000620219 LMO1P25800 156 aa13.02□□□□□ -0.32
CPSF1-213ENST00000620219 P2RY1P47900 373 aa13.02□□□□□ -0.32
CPSF1-213ENST00000620219 SLC38A11Q08AI6 406 aa13.02□□□□□ -0.32
CPSF1-213ENST00000620219 LILRB1Q8NHL6 650 aaPredicted RBP13.02□□□□□ -0.32
CPSF1-213ENST00000620219 ZNF251Q9BRH9 671 aa13.02□□□□□ -0.32
CPSF1-213ENST00000620219 SAA2-SAA4A0A096LPE2 208 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 SAA2P0DJI9 122 aaPredicted RBP13.02□□□□□ -0.33
CPSF1-213ENST00000620219 COX6B1P14854 86 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 C3orf36Q3SXR2 165 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 ARSJQ5FYB0 599 aaPredicted RBP13.02□□□□□ -0.33
CPSF1-213ENST00000620219 ZNF66Q6ZN08 573 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 PNKDQ8N490 385 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 AQP10Q96PS8 301 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 PLEKHA3Q9HB20 300 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 THBS3P49746 956 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 FLYWCH2Q96CP2 140 aaKnown RBP13.02□□□□□ -0.33
CPSF1-213ENST00000620219 C18orf12Q96KH6 178 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 MMP24Q9Y5R2 645 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 ABCA12Q86UK0 2595 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 IGHV3OR16-10A0A075B7F0 116 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 SOX15O60248 233 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 HPRT1P00492 218 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 SOD3P08294 240 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 ZDHHC16Q969W1 377 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 HES4Q9HCC6 221 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 LINC00312Q9Y6C7 94 aa13.02□□□□□ -0.33
CPSF1-213ENST00000620219 DYSFO75923 2080 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 PLA2G5P39877 138 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 C9orf152Q5JTZ5 239 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 TMEM200BQ69YZ2 307 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 RND3P61587 244 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 OR13D1Q8NGV5 346 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 CIB3Q96Q77 187 aaPredicted RBP13.01□□□□□ -0.33
CPSF1-213ENST00000620219 DEFA4P12838 97 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 TUSC1Q2TAM9 212 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 ETV3LQ6ZN32 361 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 ADTRPQ96IZ2 230 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 CCL19Q99731 98 aa13.01□□□□□ -0.33
CPSF1-213ENST00000620219 ARHGAP32A7KAX9 2087 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 TRBV6-6A0A0A6YYG2 114 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 ATF4P18848 351 aaPredicted RBP13□□□□□ -0.33
CPSF1-213ENST00000620219 RAB31Q13636 194 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 BPIFCQ8NFQ6 507 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 ZNF355PQ9NSJ1 428 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 TMEM140Q9NV12 185 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 MIOXQ9UGB7 285 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 LOC105371242A0A075B767 164 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 A0A1W2PPV4 95 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 LINC00473A8K010 186 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 MMP23AO75900 390 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 ARG1P05089 322 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 GATA4P43694 442 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 IGSF23A1L1A6 192 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 OR5T1Q8NG75 326 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 LHX4Q969G2 390 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 USP9XQ93008 2570 aaPredicted RBP13□□□□□ -0.33
CPSF1-213ENST00000620219 CT45A1Q5HYN5 189 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 CT45A3Q8NHU0 189 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 ACY3Q96HD9 319 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 TMEM56Q96MV1 263 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 RBKSQ9H477 322 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 IFT22Q9H7X7 185 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 TMEM56-RWDD3S4R434 201 aa13□□□□□ -0.33
CPSF1-213ENST00000620219 ZFP92A6NM28 416 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 FGF7P21781 194 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 CD24P25063 80 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 HTD2P86397 168 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 SSX2Q16385 188 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 VMA21Q3ZAQ7 101 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 MIDNQ504T8 468 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 SLC39A9Q9NUM3 307 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 H2AFB1P0C5Y9 115 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 PAX6P26367 422 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 TNXAQ16473 311 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 Q6ZS49 121 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 LDLRAD3Q86YD5 345 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 DUXBA0A1W2PPF3 345 aa12.99□□□□□ -0.33
CPSF1-213ENST00000620219 SLC25A17O43808 307 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms