RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 INMT-MINDY4F8WBC2 141 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 MOSP00540 346 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 IGKV1D-33P01593 117 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 IGKV1-33P01594 117 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 SNRNP70P08621 437 aaKnown RBP11.51□□□□□ -0.57
UPF1-211ENST00000600868 OR4E1P0C645 316 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 CBX3Q13185 183 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 MINDY2Q8NBR6 621 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 OR4C13Q8NGP0 309 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 OR2T10Q8NGZ9 312 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 OR5R1Q8NH85 324 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 CHPT1Q8WUD6 406 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 SSMEM1Q8WWF3 244 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 FLYWCH2Q96CP2 140 aaKnown RBP11.51□□□□□ -0.57
UPF1-211ENST00000600868 TP53RKQ96S44 253 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 RNF5Q99942 180 aa11.51□□□□□ -0.57
UPF1-211ENST00000600868 MTORP42345 2549 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 H3BUX3 64 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 RAMP3O60896 148 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 HPRT1P00492 218 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 IFNA2P01563 188 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 IGHV4-59P01825 116 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 IGKV1-16P04430 117 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 IL5P05113 134 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 OR5AC1P0C628 307 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 VSIG10L2P0DP72 767 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 ANXA3P12429 323 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 RPA2P15927 270 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 CD24P25063 80 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 UCP1P25874 307 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 PPP1R1AQ13522 171 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 TRIM16LQ309B1 348 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 ZNF585BQ52M93 769 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 TMEM177Q53S58 311 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 OR2B11Q5JQS5 317 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 RBMS3Q6XE24 437 aaKnown RBP11.5□□□□□ -0.57
UPF1-211ENST00000600868 TMEM86BQ8N661 226 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 Q8N6K4 173 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 OSR1Q8TAX0 266 aaPredicted RBP11.5□□□□□ -0.57
UPF1-211ENST00000600868 GLYATL2Q8WU03 294 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 EAF1Q96JC9 268 aaPredicted RBP11.5□□□□□ -0.57
UPF1-211ENST00000600868 TMEM222Q9H0R3 208 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 PLEKHA2Q9HB19 425 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 TCF19Q9Y242 345 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 POMT1Q9Y6A1 747 aa11.5□□□□□ -0.57
UPF1-211ENST00000600868 FN1P02751 2386 aaKnown RBP11.5□□□□□ -0.57
UPF1-211ENST00000600868 C9orf170A2RU37 121 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 PRAF2O60831 178 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 SFT2D2O95562 160 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 CRYZL1O95825 349 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 DHFRP00374 187 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 SERPINE2P07093 398 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 VAMP1P23763 118 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 LPAR6P43657 344 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 LGALS7P47929 136 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 RAB25P57735 213 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 DHRS2Q13268 280 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 HES1Q14469 280 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 TMEM187Q14656 261 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 SP6Q3SY56 376 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 C4orf46Q504U0 113 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 LYG2Q86SG7 212 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 ZNF418Q8TF45 676 aaPredicted RBP11.49□□□□□ -0.57
UPF1-211ENST00000600868 BEX1Q9HBH7 125 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 COMMD9Q9P000 198 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 PITPNC1Q9UKF7 332 aa11.49□□□□□ -0.57
UPF1-211ENST00000600868 A6NDX4 124 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 BTBD17A6NE02 478 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 SHOXO15266 292 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 HOXA3O43365 443 aaPredicted RBP11.48□□□□□ -0.57
UPF1-211ENST00000600868 CDS2O95674 445 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 HLA-AP01891 365 aaKnown RBP11.48□□□□□ -0.57
UPF1-211ENST00000600868 TMEM11P17152 192 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 RPS16P62249 146 aaKnown RBP11.48□□□□□ -0.57
UPF1-211ENST00000600868 SRPXP78539 464 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 HNF4GQ14541 408 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 FBLN7Q53RD9 439 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 OR8H1Q8NGG4 311 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 RBMXL1Q96E39 390 aaKnown RBP11.48□□□□□ -0.57
UPF1-211ENST00000600868 RITA1Q96K30 269 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 HARBI1Q96MB7 349 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 TMEM56Q96MV1 263 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 RBM14Q96PK6 669 aaKnown RBP11.48□□□□□ -0.57
UPF1-211ENST00000600868 TSNAXQ99598 290 aaKnown RBP11.48□□□□□ -0.57
UPF1-211ENST00000600868 AIFM2Q9BRQ8 373 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 TMEM56-RWDD3S4R434 201 aa11.48□□□□□ -0.57
UPF1-211ENST00000600868 PIGBOS1A0A0B4J2F0 54 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 SRRM4A7MD48 611 aaKnown RBP11.47□□□□□ -0.57
UPF1-211ENST00000600868 CLDN34H7C241 214 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 OR2F2O95006 317 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 S1PR2O95136 353 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 DUS4LO95620 317 aaKnown RBP11.47□□□□□ -0.57
UPF1-211ENST00000600868 HRASP01112 189 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 NQO2P16083 231 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 SLC9A3R2Q15599 337 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 POU2AF1Q16633 256 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 LIAT1Q6ZQX7 453 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 C16orf82Q7Z2V1 217 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 NPBQ8NG41 125 aa11.47□□□□□ -0.57
UPF1-211ENST00000600868 IL22RA2Q969J5 263 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms