RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 MC5RP33032 325 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 TGFBR1P36897 503 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 ECI1P42126 302 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 DGCR2P98153 550 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 OXA1LQ15070 435 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 ZNF260Q3ZCT1 412 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 TMEM65Q6PI78 240 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 UNQ5815/PRO19632Q6UWF5 114 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 LFNGQ8NES3 379 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 OR1N2Q8NGR9 330 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 OR5H6Q8NGV6 325 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 ABHD5Q8WTS1 349 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 NUDCD2Q8WVJ2 157 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 DLX4Q92988 240 aaPredicted RBP8.23□□□□□ -1.09
VRK3-214ENST00000598553 UBE2E2Q96LR5 201 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 MS4A10Q96PG2 267 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 SLC35D1Q9NTN3 355 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 RHBDL2Q9NX52 303 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 ZMAT5Q9UDW3 170 aaKnown RBP8.23□□□□□ -1.09
VRK3-214ENST00000598553 ADAM30Q9UKF2 790 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 SORL1Q92673 2214 aa8.23□□□□□ -1.09
VRK3-214ENST00000598553 LINC00473A8K010 186 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 PDCD5O14737 125 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 APELAP0DMC3 54 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 PTHLHP12272 177 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 RAB6AP20340 208 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 MYL9P24844 172 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 BCAP31P51572 246 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 RPS16P62249 146 aaKnown RBP8.22□□□□□ -1.09
VRK3-214ENST00000598553 RUNX1Q01196 453 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 ZNF616Q08AN1 781 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 PLGLAQ15195 96 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 C9orf66Q5T8R8 295 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 ZNF660Q6AZW8 331 aaPredicted RBP8.22□□□□□ -1.09
VRK3-214ENST00000598553 PPP1R27Q86WC6 154 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 H1FOOQ8IZA3 346 aaPredicted RBP8.22□□□□□ -1.09
VRK3-214ENST00000598553 BVESQ8NE79 360 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 OR4A4PQ8NGN8 299 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 GRPEL2Q8TAA5 225 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 LGALS14Q8TCE9 139 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 DDB2Q92466 427 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 GPHA2Q96T91 129 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 B9D2Q9BPU9 175 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 ATG5Q9H1Y0 275 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 FOXA2Q9Y261 457 aaPredicted RBP8.22□□□□□ -1.09
VRK3-214ENST00000598553 VSIG4Q9Y279 399 aa8.22□□□□□ -1.09
VRK3-214ENST00000598553 IGKV1D-13A0A0B4J2D9 117 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 LOC100506127A0A0U1RQW1 187 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 TMEM235A6NFC5 223 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 SPDEFO95238 335 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 DIRAS3O95661 229 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 IGLV2-14P01704 120 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 TRBV12-3P01733 135 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 OR8U8P0C7N1 319 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 IGKV1-13P0DP09 117 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 GALP22466 123 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 ETV6P41212 452 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 DEFA1P59665 94 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 DEFA3P59666 94 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 RPL30P62888 115 aaKnown RBP8.21□□□□□ -1.1
VRK3-214ENST00000598553 MRPS15P82914 257 aaKnown RBP8.21□□□□□ -1.1
VRK3-214ENST00000598553 ARFRP1Q13795 201 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 IDO2Q6ZQW0 420 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 PDPNQ86YL7 162 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 TCTEX1D1Q8N7M0 179 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.21□□□□□ -1.1
VRK3-214ENST00000598553 ARPC1AQ92747 370 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 SLC25A38Q96DW6 304 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 ASCL2Q99929 193 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 RNF5Q99942 180 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 ZNF221Q9UK13 617 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 STUB1Q9UNE7 303 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 SSR3Q9UNL2 185 aa8.21□□□□□ -1.1
VRK3-214ENST00000598553 HUWE1Q7Z6Z7 4374 aaKnown RBP8.2□□□□□ -1.1
VRK3-214ENST00000598553 RAMP3O60896 148 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 UPK1BO75841 260 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 APOA2P02652 100 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 FCER2P06734 321 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 LGALS1P09382 135 aaKnown RBP8.2□□□□□ -1.1
VRK3-214ENST00000598553 NFYAP23511 347 aaPredicted RBP8.2□□□□□ -1.1
VRK3-214ENST00000598553 FGF9P31371 208 aaPredicted RBP8.2□□□□□ -1.1
VRK3-214ENST00000598553 SDC2P34741 201 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 TPPP2P59282 170 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 TAGLNQ01995 201 aaKnown RBP8.2□□□□□ -1.1
VRK3-214ENST00000598553 MXD1Q05195 221 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 CD69Q07108 199 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 FXYD3Q14802 87 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 ACTBL2Q562R1 376 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 SPANXN2Q5MJ10 180 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 VAX1Q5SQQ9 334 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 C10orf55Q5SWW7 151 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 C19orf35Q6ZS72 473 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 OR5T1Q8NG75 326 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 HARBI1Q96MB7 349 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 TSNAXQ99598 290 aaKnown RBP8.2□□□□□ -1.1
VRK3-214ENST00000598553 CENPOQ9BU64 300 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 CCDC32Q9BV29 185 aa8.2□□□□□ -1.1
VRK3-214ENST00000598553 C6orf62Q9GZU0 229 aaPredicted RBP8.2□□□□□ -1.1
VRK3-214ENST00000598553 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.2□□□□□ -1.1
VRK3-214ENST00000598553 NOTOA8MTQ0 251 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms