RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	COL10A1	Q03692	680 aa		12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	IQCJ	Q1A5X6	159 aa		12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	PDZD11	Q5EBL8	140 aa		12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	FAM90A1	Q86YD7	464 aa		12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	FOXRED2	Q8IWF2	684 aa		12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	FAM213B	Q8TBF2	198 aa		12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	ERGIC1	Q969X5	290 aa		12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	ACY3	Q96HD9	319 aa		12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	PARP12	Q9H0J9	701 aa	Known RBP	12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	WIPI2	Q9Y4P8	454 aa		12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	LSM5	Q9Y4Y9	91 aa	Known RBP	12.85	□□□□□ -0.35
DDX39A-209	ENST00000589318	TRAV39	A0A0B4J263	110 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	PPP5D1	E7EU14	171 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	CD3E	P07766	207 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	SNRPC	P09234	159 aa	Known RBP	12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	ERVFC1-1	P60608	527 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	ZNF343	Q6P1L6	599 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	TGIF2LY	Q8IUE0	185 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	ZCCHC24	Q8N2G6	241 aa	Known RBP	12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318		Q8TCH9	128 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	COQ2	Q96H96	371 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	CABLES2	Q9BTV7	478 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	ZNF737	O75373	536 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	TUSC2	O75896	110 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	CYB5R3	P00387	301 aa	Predicted RBP	12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	PPY	P01298	95 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	GNLY	P22749	145 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	TNFSF4	P23510	183 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	PPP1CC	P36873	323 aa	Known RBP	12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	UCP3	P55916	312 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	FXYD4	P59646	89 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	C4orf17	Q53FE4	359 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	MOB1B	Q7L9L4	216 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	TOMM40L	Q969M1	308 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	DIRC2	Q96SL1	478 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	WSB1	Q9Y6I7	421 aa		12.84	□□□□□ -0.35
DDX39A-209	ENST00000589318	RAI1	Q7Z5J4	1906 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	IGHV3OR15-7	A0A075B7D8	119 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	DEFB108A	A8MXU0	73 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	EREG	O14944	169 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	HSPA12A	O43301	675 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	SCAF4	O95104	1147 aa	Known RBP	12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	ZNF728	P0DKX0	622 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	ZNF25	P17030	456 aa	Predicted RBP	12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	PRDX2	P32119	198 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	RND3	P61587	244 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	CCL8	P80075	99 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	TLE1	Q04724	770 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	FAM201A	Q5SY85	155 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	OR1P1	Q8NH06	330 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	FAM222B	Q8WU58	562 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	RARRES2	Q99969	163 aa		12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	SPTBN1	Q01082	2364 aa	Known RBP	12.83	□□□□□ -0.36
DDX39A-209	ENST00000589318	CRYM-AS1	A6NIL9	109 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	AMBP	P02760	352 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	CTXN2	P0C2S0	81 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	PDLIM4	P50479	330 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	PAX5	Q02548	391 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	AES	Q08117	197 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	SLC35E4	Q6ICL7	350 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	LRTM2	Q8N967	370 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	SNHG12	Q9BXW3	62 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	SRD5A3	Q9H8P0	318 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	WFDC1	Q9HC57	220 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	PRR13	Q9NZ81	148 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	RNF7	Q9UBF6	113 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	TRAPPC2L	Q9UL33	140 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	RNF115	Q9Y4L5	304 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	TANC2	Q9HCD6	1990 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	TMEM30CP	A0ZSE6	113 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	MBP	P02686	304 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	G0S2	P27469	103 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	APOBEC3A	P31941	199 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	FHIT	P49789	147 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	EFNB3	Q15768	340 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	SP5	Q6BEB4	398 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	TMEM182	Q6ZP80	229 aa	Predicted RBP	12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	OR10A7	Q8NGE5	316 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	PPP1R3C	Q9UQK1	317 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	URGCP-MRPS24	S4R325	110 aa		12.82	□□□□□ -0.36
DDX39A-209	ENST00000589318	CACNA1B	Q00975	2339 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	HRNR	Q86YZ3	2850 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	IGKV1D-13	A0A0B4J2D9	117 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	VSTM5	A8MXK1	200 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	NPIPB11	E5RHQ5	1161 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	ZG16	O60844	167 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	RPLP1	P05386	114 aa	Known RBP	12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	IGKV1-13	P0DP09	117 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	HERV-K104	P61576	105 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	TLE4	Q04727	773 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	ICAM4	Q14773	271 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	SPSB3	Q6PJ21	355 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	OR10J5	Q8NHC4	309 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	ITLN2	Q8WWU7	325 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	TMEM18	Q96B42	140 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	GNPNAT1	Q96EK6	184 aa	Predicted RBP	12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	TMEM204	Q9BSN7	226 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	ABCA4	P78363	2273 aa		12.81	□□□□□ -0.36
DDX39A-209	ENST00000589318	DSCAML1	Q8TD84	2053 aa		12.8	□□□□□ -0.36
DDX39A-209	ENST00000589318	ST8SIA3	O43173	380 aa		12.8	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms