RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 CST9Q5W186 159 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 FAM71E1Q6IPT2 247 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 LCN12Q6JVE5 192 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 DNM1P34Q6PK57 102 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 ZNF322Q6U7Q0 402 aaPredicted RBP3.68□□□□□ -1.82
SS18-223ENST00000583595 TMEM150AQ86TG1 271 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 C10orf111Q8N326 155 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 OR4K17Q8NGC6 315 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 OR5B17Q8NGF7 314 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 OR5AR1Q8NGP9 310 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 OR4S2Q8NH73 311 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 SFXN5Q8TD22 340 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 Q8WTZ3 238 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 ARPC1AQ92747 370 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 FRZBQ92765 325 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 IMP4Q96G21 291 aaKnown RBP3.68□□□□□ -1.82
SS18-223ENST00000583595 LYSMD1Q96S90 227 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 MS4A8Q9BY19 250 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 ULBP1Q9BZM6 244 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 POLR2J3Q9H1A7 115 aaKnown RBP3.68□□□□□ -1.82
SS18-223ENST00000583595 SLC35B3Q9H1N7 401 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 CST9LQ9H4G1 147 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 RDH14Q9HBH5 336 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 LRTM1Q9HBL6 345 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 CYTL1Q9NRR1 136 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 FKBP11Q9NYL4 201 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 CLCF1Q9UBD9 225 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 ZNF230Q9UIE0 474 aaPredicted RBP3.68□□□□□ -1.82
SS18-223ENST00000583595 MRPS18BQ9Y676 258 aaKnown RBP3.68□□□□□ -1.82
SS18-223ENST00000583595 DOCK5Q9H7D0 1870 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 ADAMTSL1Q8N6G6 1762 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 LRRK1Q38SD2 2015 aa3.68□□□□□ -1.82
SS18-223ENST00000583595 K7EPK0 472 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 ZG16O60844 167 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 ARL6IP5O75915 188 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 GAS8-AS1O95177 125 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 PDYNP01213 254 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 IGHV3-48P01763 117 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 HLA-DQB2P05538 268 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 CXCL1P09341 107 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 TACSTD2P09758 323 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 OR5G3P0C626 314 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 AKAIN1P0CW23 69 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 PGA3P0DJD8 388 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 GZMHP20718 246 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 LPAR6P43657 344 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 PPICP45877 212 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 OR3A4PP47883 348 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 P2RX1P51575 399 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 CLDN6P56747 220 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 ERVS71-1P61550 626 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 PAFAH1B2P68402 229 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 HIST1H3AP68431 136 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 BTG2P78543 158 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 RHOGP84095 191 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 REG3AQ06141 175 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 UNC119Q13432 240 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 FZD2Q14332 565 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 EBPQ15125 230 aaKnown RBP3.67□□□□□ -1.82
SS18-223ENST00000583595 OR7A5Q15622 319 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 TMEM183BQ1AE95 376 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 SLC25A35Q3KQZ1 300 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 SAMD13Q5VXD3 122 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 TMPPEQ6ZT21 453 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 FAM71E2Q8N5Q1 922 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 CDRT4Q8N9R6 151 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 ZNF740Q8NDX6 193 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 LFNGQ8NES3 379 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 VN1R2Q8NFZ6 395 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 OR10W1Q8NGF6 305 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 OR6N2Q8NGY6 317 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 LGALS14Q8TCE9 139 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 ACER1Q8TDN7 264 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 FAM222BQ8WU58 562 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 PPP1R1CQ8WVI7 109 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 RGP1Q92546 391 aaPredicted RBP3.67□□□□□ -1.82
SS18-223ENST00000583595 DCUN1D4Q92564 292 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 MS4A6EQ96DS6 147 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 S100A16Q96FQ6 103 aaKnown RBP3.67□□□□□ -1.82
SS18-223ENST00000583595 REEP6Q96HR9 211 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 FOXN4Q96NZ1 517 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 SLC25A21Q9BQT8 299 aaPredicted RBP3.67□□□□□ -1.82
SS18-223ENST00000583595 ULBP2Q9BZM5 246 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 TCEAL2Q9H3H9 227 aaPredicted RBP3.67□□□□□ -1.82
SS18-223ENST00000583595 NECAP2Q9NVZ3 263 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 TMEM242Q9NWH2 141 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 TAS2R13Q9NYV9 303 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 XCL2Q9UBD3 114 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 Q9UF83 564 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 TSSC4Q9Y5U2 329 aaPredicted RBP3.67□□□□□ -1.82
SS18-223ENST00000583595 LTBP1Q14766 1721 aa3.67□□□□□ -1.82
SS18-223ENST00000583595 TRBV24-1A0A075B6N3 115 aa3.66□□□□□ -1.82
SS18-223ENST00000583595 IGHV7-81A0A0B4J1V7 117 aa3.66□□□□□ -1.82
SS18-223ENST00000583595 A0A0B4J2A0 478 aa3.66□□□□□ -1.82
SS18-223ENST00000583595 A0A1W2PPR1 153 aa3.66□□□□□ -1.82
SS18-223ENST00000583595 TLCD2A6NGC4 264 aa3.66□□□□□ -1.82
SS18-223ENST00000583595 ZNF705FA8MVS1 300 aaPredicted RBP3.66□□□□□ -1.82
SS18-223ENST00000583595 HIDE1A8MVS5 230 aa3.66□□□□□ -1.82
SS18-223ENST00000583595 K7EMT4 169 aa3.66□□□□□ -1.82
SS18-223ENST00000583595 ERI3O43414 337 aaKnown RBP3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms