RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 MEX3AA1L020 520 aaKnown RBP8.3□□□□□ -1.08
SS18-210ENST00000578700 RGS13O14921 159 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 ST8SIA5O15466 376 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 DUX4L2P0CJ85 424 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 DUX4L3P0CJ86 424 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 DUX4L4P0CJ87 422 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 DUX4L5P0CJ88 424 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 DUX4L6P0CJ89 424 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 DUX4L7P0CJ90 424 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 S100A11P31949 105 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 AKR1C2P52895 323 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 AP2S1P53680 142 aaPredicted RBP8.3□□□□□ -1.08
SS18-210ENST00000578700 ZNF345Q14585 488 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 OPCMLQ14982 345 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 C17orf58Q2M2W7 97 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 LGALSLQ3ZCW2 172 aaPredicted RBP8.3□□□□□ -1.08
SS18-210ENST00000578700 TMEM155Q4W5P6 130 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 LAMTOR1Q6IAA8 161 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 DUX4L9Q6RFH8 374 aaPredicted RBP8.3□□□□□ -1.08
SS18-210ENST00000578700 LYPD2Q6UXB3 125 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 ACOT7LQ6ZUV0 252 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 ZNF767PQ75MW2 155 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 SELENOHQ8IZQ5 122 aaKnown RBP8.3□□□□□ -1.08
SS18-210ENST00000578700 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.3□□□□□ -1.08
SS18-210ENST00000578700 OR8H1Q8NGG4 311 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 OR10C1Q96KK4 312 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 ZNF48Q96MX3 618 aaPredicted RBP8.3□□□□□ -1.08
SS18-210ENST00000578700 ABHD14AQ9BUJ0 271 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 ARL6Q9H0F7 186 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 LINC00574Q9H8X3 128 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 MMP26Q9NRE1 261 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 TNFRSF19Q9NS68 423 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 FAM212BQ9NTI7 297 aaPredicted RBP8.3□□□□□ -1.08
SS18-210ENST00000578700 DUX4Q9UBX2 424 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 PRELID3BQ9Y3B1 194 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 AUP1Q9Y679 476 aa8.3□□□□□ -1.08
SS18-210ENST00000578700 TRAV14DV4A0A0A6YYC5 116 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 A0A1B0GU03 582 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 G3V3Q6 166 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 WRBO00258 174 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 TNFRSF13BO14836 293 aaPredicted RBP8.29□□□□□ -1.08
SS18-210ENST00000578700 RAB29O14966 203 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 ST8SIA3O43173 380 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 FOXH1O75593 365 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 FSHBP01225 129 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 IFNA7P01567 189 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 IGHV2-70P01814 119 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 CGB3P0DN86 165 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 CGB7P0DN87 165 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 KIR2DS2P43631 304 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 RAB32Q13637 225 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 NDUFA5Q16718 116 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 Q3ZCU0 254 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 TMUB2Q71RG4 321 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 FOXRED2Q8IWF2 684 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 OR1S1Q8NH92 325 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 NEIL1Q96FI4 390 aaPredicted RBP8.29□□□□□ -1.08
SS18-210ENST00000578700 ABHD14BQ96IU4 210 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 S1PR3Q99500 378 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 PARP12Q9H0J9 701 aaKnown RBP8.29□□□□□ -1.08
SS18-210ENST00000578700 MBD2Q9UBB5 411 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 RPUSD1Q9UJJ7 312 aaKnown RBP8.29□□□□□ -1.08
SS18-210ENST00000578700 TNFSF18Q9UNG2 199 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 LSM5Q9Y4Y9 91 aaKnown RBP8.29□□□□□ -1.08
SS18-210ENST00000578700 SOX21Q9Y651 276 aaPredicted RBP8.29□□□□□ -1.08
SS18-210ENST00000578700 TANC2Q9HCD6 1990 aa8.29□□□□□ -1.08
SS18-210ENST00000578700 DOCK11Q5JSL3 2073 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 E5RGE8 158 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 M0R1X1 148 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 RNASE1P07998 156 aaKnown RBP8.28□□□□□ -1.08
SS18-210ENST00000578700 SLC25A6P12236 298 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 CXCL2P19875 107 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 LPAR6P43657 344 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 NKX2-1P43699 371 aaPredicted RBP8.28□□□□□ -1.08
SS18-210ENST00000578700 LOXL3P58215 753 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 RAB14P61106 215 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 VAMP2P63027 116 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 KLF17Q5JT82 389 aaPredicted RBP8.28□□□□□ -1.08
SS18-210ENST00000578700 PRAMEF5Q5TYX0 476 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 TMEM200BQ69YZ2 307 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 HEPN1Q6WQI6 88 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 FAM219AQ8IW50 185 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 SPAG16Q8N0X2 631 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 KCNRGQ8N5I3 272 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 KIR3DL3Q8N743 410 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 LSM10Q969L4 123 aaKnown RBP8.28□□□□□ -1.08
SS18-210ENST00000578700 ADTRPQ96IZ2 230 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 PLEKHA2Q9HB19 425 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 C19orf12Q9NSK7 152 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 SDHAF2Q9NX18 166 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 GAB2Q9UQC2 676 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 NSG2Q9Y328 171 aa8.28□□□□□ -1.08
SS18-210ENST00000578700 NBEAL2Q6ZNJ1 2754 aa8.27□□□□□ -1.09
SS18-210ENST00000578700 MPTX1A8MV57 137 aa8.27□□□□□ -1.09
SS18-210ENST00000578700 K7EPK0 472 aa8.27□□□□□ -1.09
SS18-210ENST00000578700 DEDDO75618 318 aa8.27□□□□□ -1.09
SS18-210ENST00000578700 IGLV2-14P01704 120 aa8.27□□□□□ -1.09
SS18-210ENST00000578700 LYL1P12980 280 aa8.27□□□□□ -1.09
SS18-210ENST00000578700 IL3RAP26951 378 aa8.27□□□□□ -1.09
SS18-210ENST00000578700 EIF5AP63241 154 aaKnown RBP8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms