RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 NRASP01111 189 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 SLC25A34Q6PIV7 304 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.22□□□□□ -0.93
CLK3-226ENST00000569406 WDR54Q9H977 334 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 PRTFDC1Q9NRG1 225 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 SVILO95425 2214 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 HS3ST1O14792 307 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 NEURL1O76050 574 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 IGKV3-11P04433 115 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 DYNLT3P51808 116 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 ZNF595Q8IYB9 648 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 NEU4Q8WWR8 484 aaPredicted RBP9.22□□□□□ -0.93
CLK3-226ENST00000569406 PECRQ9BY49 303 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 MMP25Q9NPA2 562 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 RPRMQ9NS64 109 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 KCNIP1Q9NZI2 227 aa9.22□□□□□ -0.93
CLK3-226ENST00000569406 ARHGAP21Q5T5U3 1957 aa9.21□□□□□ -0.93
CLK3-226ENST00000569406 NXPH3O95157 252 aa9.21□□□□□ -0.93
CLK3-226ENST00000569406 FSTP19883 344 aa9.21□□□□□ -0.93
CLK3-226ENST00000569406 NPY1RP25929 384 aa9.21□□□□□ -0.93
CLK3-226ENST00000569406 IER3P46695 156 aa9.21□□□□□ -0.93
CLK3-226ENST00000569406 HIST1H1AQ02539 215 aaPredicted RBP9.21□□□□□ -0.93
CLK3-226ENST00000569406 ZNF90Q03938 601 aa9.21□□□□□ -0.93
CLK3-226ENST00000569406 DTWD2Q8NBA8 298 aa9.21□□□□□ -0.93
CLK3-226ENST00000569406 EMG1Q92979 244 aaKnown RBP9.21□□□□□ -0.93
CLK3-226ENST00000569406 CYYR1Q96J86 154 aa9.21□□□□□ -0.93
CLK3-226ENST00000569406 GPX7Q96SL4 187 aaPredicted RBP9.21□□□□□ -0.93
CLK3-226ENST00000569406 NDFIP1Q9BT67 221 aa9.21□□□□□ -0.93
CLK3-226ENST00000569406 ST20Q9HBF5 79 aa9.21□□□□□ -0.93
CLK3-226ENST00000569406 IGSF23A1L1A6 192 aa9.21□□□□□ -0.94
CLK3-226ENST00000569406 AGFG2O95081 481 aa9.21□□□□□ -0.94
CLK3-226ENST00000569406 WNT2P09544 360 aa9.21□□□□□ -0.94
CLK3-226ENST00000569406 SPINK8P0C7L1 97 aa9.21□□□□□ -0.94
CLK3-226ENST00000569406 WDR38Q5JTN6 314 aa9.21□□□□□ -0.94
CLK3-226ENST00000569406 MRPL30Q8TCC3 161 aaKnown RBP9.21□□□□□ -0.94
CLK3-226ENST00000569406 WDR61Q9GZS3 305 aaKnown RBP9.21□□□□□ -0.94
CLK3-226ENST00000569406 EMC9Q9Y3B6 208 aa9.21□□□□□ -0.94
CLK3-226ENST00000569406 ZNF878C9JN71 531 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 MPIG6BO95866 241 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 ZNF728P0DKX0 622 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 SSC4DQ8WTU2 575 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 KLHDC7BQ96G42 594 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 GMPPAQ96IJ6 420 aaPredicted RBP9.2□□□□□ -0.94
CLK3-226ENST00000569406 RCHY1Q96PM5 261 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 AKIRIN1Q9H9L7 192 aaPredicted RBP9.2□□□□□ -0.94
CLK3-226ENST00000569406 FGF21Q9NSA1 209 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 A0A1W2PS18 150 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 NPIPB5A8MRT5 1133 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 SNURFLB1AK76 121 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 SIRPB1O00241 398 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 SPINK4O60575 86 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 SSTR5P35346 364 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 TSPO2Q5TGU0 170 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 SHISA6Q6ZSJ9 500 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 SCCPDHQ8NBX0 429 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 PLPPR1Q8TBJ4 325 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 ZNF418Q8TF45 676 aaPredicted RBP9.2□□□□□ -0.94
CLK3-226ENST00000569406 RNF133Q8WVZ7 376 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 DAZAP1Q96EP5 407 aaKnown RBP9.2□□□□□ -0.94
CLK3-226ENST00000569406 NECAP2Q9NVZ3 263 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 TMEM14AQ9Y6G1 99 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 PSMB11A5LHX3 300 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 LILRA5A6NI73 299 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 SSSCA1O60232 199 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 ZNF324O75467 553 aaPredicted RBP9.2□□□□□ -0.94
CLK3-226ENST00000569406 ZNF117Q03924 483 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 FAM166AQ6J272 317 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 KCTD18Q6PI47 426 aaPredicted RBP9.2□□□□□ -0.94
CLK3-226ENST00000569406 ZNF721Q8TF20 911 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 VSIRQ9H7M9 311 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 AHCTF1Q8WYP5 2266 aa9.2□□□□□ -0.94
CLK3-226ENST00000569406 ZNF816-ZNF321PA0A0X1KG74 233 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 ASAH2BP0C7U1 165 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 ACSF3Q4G176 576 aaPredicted RBP9.19□□□□□ -0.94
CLK3-226ENST00000569406 CENPVQ7Z7K6 275 aaPredicted RBP9.19□□□□□ -0.94
CLK3-226ENST00000569406 LHX4Q969G2 390 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 KCNS1Q96KK3 526 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 NXF5Q9H1B4 397 aaKnown RBP9.19□□□□□ -0.94
CLK3-226ENST00000569406 SH2D2AQ9NP31 389 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 CRIM1Q9NZV1 1036 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 CLCF1Q9UBD9 225 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 FBLN5Q9UBX5 448 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 ERG28Q9UKR5 140 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 HILPDAQ9Y5L2 63 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 hDV102S1A0JD36 115 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 HELTA6NFD8 242 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 SLC17A3O00476 420 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 EGR1P18146 543 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 FMODQ06828 376 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 IGFBP7Q16270 282 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 ADAMTSL5Q6ZMM2 481 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 LMX1AQ8TE12 382 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 WNT16Q9UBV4 365 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 CACNA1DQ01668 2161 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 A0A0G2JLM5 398 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 PITX3O75364 302 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 VDAC1P21796 283 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 NPBWR2P48146 333 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 NUDT22Q9BRQ3 303 aa9.19□□□□□ -0.94
CLK3-226ENST00000569406 ABHD16AO95870 558 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms