RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 SLC18A1P54219 525 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 H2BFSP57053 126 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 RWDD2BP57060 319 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 GNG3P63215 75 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 HIST1H3AP68431 136 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 H3F3AP84243 136 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 TFAMQ00059 246 aaKnown RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 PSG4Q00888 419 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 RUNX1Q01196 453 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ADIGQ0VDE8 80 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 C1DQ13901 141 aaKnown RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 PAFAH1B3Q15102 231 aaKnown RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 EBPQ15125 230 aaKnown RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 CDK10Q15131 360 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ACOT6Q3I5F7 207 aaPredicted RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 ARHGAP11BQ3KRB8 267 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 LINC00303Q3SY05 128 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 LGALSLQ3ZCW2 172 aaPredicted RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 ZNF404Q494X3 552 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ATP6AP1LQ52LC2 224 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 PYCR3Q53H96 274 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 CLLU1OSQ5K130 101 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 N4BP2L1Q5TBK1 243 aaPredicted RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 GLYATQ6IB77 296 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ALKAL1Q6UXT8 129 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 CYHR1Q6ZMK1 362 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 HIST2H3AQ71DI3 136 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ZNF550Q7Z398 422 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 GLT6D1Q7Z4J2 308 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 VN1R4Q7Z5H5 301 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 GALNT10Q86SR1 603 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 LINC00596Q86U02 117 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 NAA40Q86UY6 237 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 PHF13Q86YI8 300 aaPredicted RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 SLC25A45Q8N413 288 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 SMIM20Q8N5G0 67 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 NATD1Q8N6N6 113 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ZDHHC22Q8N966 263 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ZIC4Q8N9L1 334 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR11H1Q8NG94 326 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR11H2Q8NH07 326 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR8S1Q8NH09 359 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR4X1Q8NH49 305 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ORAOV1Q8WV07 137 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 KCTD4Q8WVF5 259 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 TNFAIP8L1Q8WVP5 186 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 RASSF5Q8WWW0 418 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 CPNE2Q96FN4 548 aaPredicted RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 MRPL48Q96GC5 212 aaKnown RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 DCUN1D1Q96GG9 259 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 SLC25A44Q96H78 314 aaPredicted RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 SFRP2Q96HF1 295 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 C20orf166-AS1Q96NR2 134 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OLFM3Q96PB7 478 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR2A7Q96R45 310 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 LINC01587Q99440 93 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 PRSS27Q9BQR3 290 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 KIFC1Q9BW19 673 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 GNB1LQ9BYB4 327 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 MRPL20Q9BYC9 149 aaKnown RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 TRIM4Q9C037 500 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 C6orf62Q9GZU0 229 aaPredicted RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 FAM107BQ9H098 131 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OR51I2Q9H344 312 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 BOLA2Q9H3K6 86 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ENY2Q9NPA8 101 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 UBQLN4Q9NRR5 601 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 PARVAQ9NVD7 372 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 IDI2-AS1Q9NZ38 188 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 DOK5Q9P104 306 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 OPTCQ9UBM4 332 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 GLS2Q9UI32 602 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 POMPQ9Y244 141 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 BTRCQ9Y297 605 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 PRELID3BQ9Y3B1 194 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 HDGFL3Q9Y3E1 203 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 FAM32AQ9Y421 112 aaKnown RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 INSIG2Q9Y5U4 225 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ZNF706Q9Y5V0 76 aaPredicted RBP0.79□□□□□ -2.28
VPS35-207ENST00000568191 ZNF780BQ9Y6R6 833 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 KIF15Q9NS87 1388 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 WRNQ14191 1432 aaPredicted RBP eCLIP0.79□□□□□ -2.28
VPS35-207ENST00000568191 DSCAMO60469 2012 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 ARAP3Q8WWN8 1544 aa0.79□□□□□ -2.28
VPS35-207ENST00000568191 POLEQ07864 2286 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 THSD7AQ9UPZ6 1657 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 XIRP1Q702N8 1843 aaKnown RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 ATAD5Q96QE3 1844 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 RALGAPA2Q2PPJ7 1873 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 ZNF106Q9H2Y7 1883 aaKnown RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 MYH7BA7E2Y1 1941 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 DICER1Q9UPY3 1922 aaKnown RBP0.78□□□□□ -2.28
VPS35-207ENST00000568191 DOCK4Q8N1I0 1966 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 FANCMQ8IYD8 2048 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 MPDZO75970 2070 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 FAM236DA0A1B0GTK5 79 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 EXOC1LA0A1B0GW35 172 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 C5orf49A4QMS7 147 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 GMNCA6NCL1 334 aa0.78□□□□□ -2.28
VPS35-207ENST00000568191 OR4C46A6NHA9 309 aa0.78□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms