RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 LHX4Q969G2 390 aa8.38□□□□□ -1.07
USP3-219ENST00000561326 RPEQ96AT9 228 aa8.38□□□□□ -1.07
USP3-219ENST00000561326 C1orf159Q96HA4 380 aa8.38□□□□□ -1.07
USP3-219ENST00000561326 REG4Q9BYZ8 158 aa8.38□□□□□ -1.07
USP3-219ENST00000561326 SLC35D1Q9NTN3 355 aa8.38□□□□□ -1.07
USP3-219ENST00000561326 MMP24Q9Y5R2 645 aa8.38□□□□□ -1.07
USP3-219ENST00000561326 MINOS1-NBL1R4GNA1 71 aa8.38□□□□□ -1.07
USP3-219ENST00000561326 PRRC2AP48634 2157 aaKnown RBP8.37□□□□□ -1.07
USP3-219ENST00000561326 ITPR2Q14571 2701 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 MPTX1A8MV57 137 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 OOSP1A8MZH6 123 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 SMLR1H3BR10 107 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 ST8SIA3O43173 380 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 MPC2O95563 127 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 CRYZL1O95825 349 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 C4BPBP20851 252 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 NUP62P37198 522 aaPredicted RBP8.37□□□□□ -1.07
USP3-219ENST00000561326 BRWD1-AS2P59051 145 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 CCDC144NLQ6NUI1 221 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 C1orf229Q6ZS94 237 aaPredicted RBP8.37□□□□□ -1.07
USP3-219ENST00000561326 MOB3BQ86TA1 216 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 PDPNQ86YL7 162 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 OR5AN1Q8NGI8 311 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 OR4C13Q8NGP0 309 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 OR1S1Q8NH92 325 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 OSR1Q8TAX0 266 aaPredicted RBP8.37□□□□□ -1.07
USP3-219ENST00000561326 GPR146Q96CH1 333 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 R3HDM4Q96D70 268 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 NABP2Q9BQ15 211 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 MRPL20Q9BYC9 149 aaKnown RBP8.37□□□□□ -1.07
USP3-219ENST00000561326 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.37□□□□□ -1.07
USP3-219ENST00000561326 ZNRD1Q9P1U0 126 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 WASHC3Q9Y3C0 194 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 TBL2Q9Y4P3 447 aaKnown RBP8.37□□□□□ -1.07
USP3-219ENST00000561326 AUP1Q9Y679 476 aa8.37□□□□□ -1.07
USP3-219ENST00000561326 TET2Q6N021 2002 aaPredicted RBP8.36□□□□□ -1.07
USP3-219ENST00000561326 TNCP24821 2201 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 MARCH11A6NNE9 402 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 FAM90A9PA6NNJ1 464 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 HMSDA8MTL9 139 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 RNF223E7ERA6 249 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 LY6LH3BQJ8 138 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 WRBO00258 174 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 SHOXO15266 292 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 S1PR2O95136 353 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 IGKV1-39P01597 117 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 IGKV1D-39P04432 117 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 SLC25A4P12235 298 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 MMP9P14780 707 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 HOXB4P17483 251 aaPredicted RBP8.36□□□□□ -1.07
USP3-219ENST00000561326 PVALBP20472 110 aaPredicted RBP8.36□□□□□ -1.07
USP3-219ENST00000561326 G6PCP35575 357 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 NKX2-1P43699 371 aaPredicted RBP8.36□□□□□ -1.07
USP3-219ENST00000561326 REG1BP48304 166 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 DLX1P56177 255 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 LINC00205P59089 165 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 IL15RAQ13261 267 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 LRRC37A5PQ49AS3 106 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 MIDNQ504T8 468 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 C11orf87Q6NUJ2 197 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 TMEM65Q6PI78 240 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 ZNF546Q86UE3 836 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 OR8H3Q8N146 312 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 OR4P4Q8NGL7 312 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 FLYWCH2Q96CP2 140 aaKnown RBP8.36□□□□□ -1.07
USP3-219ENST00000561326 MALSU1Q96EH3 234 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 WDR89Q96FK6 387 aaPredicted RBP8.36□□□□□ -1.07
USP3-219ENST00000561326 Q96MF0 132 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 HIF1ANQ9NWT6 349 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 COA4Q9NYJ1 87 aa8.36□□□□□ -1.07
USP3-219ENST00000561326 ABCA1O95477 2261 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 FXYD6-FXYD2A0A087WZ82 144 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 IGHV1-3A0A0C4DH29 117 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 ODF3BA8MYP8 253 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 FAM90A26D6RGX4 464 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 RNASEK-C17orf49H0YIS7 233 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 H0YJW9 148 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 J3QLI3 93 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 RBMXL2O75526 392 aaKnown RBP8.35□□□□□ -1.07
USP3-219ENST00000561326 MED6O75586 246 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 SCGB1D2O95969 90 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 IGKV1-5P01602 117 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 LGALS7P47929 136 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 S100A10P60903 97 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 RPS16P62249 146 aaKnown RBP8.35□□□□□ -1.07
USP3-219ENST00000561326 PRB3Q04118 309 aaPredicted RBP8.35□□□□□ -1.07
USP3-219ENST00000561326 KLRD1Q13241 179 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 RAB32Q13637 225 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 Q5BKY6 102 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 TPTE2P1Q5T6R2 138 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 HCP5Q6MZN7 132 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 FOXRED2Q8IWF2 684 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 INO80EQ8NBZ0 244 aaPredicted RBP8.35□□□□□ -1.07
USP3-219ENST00000561326 OR4A16Q8NH70 328 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 RHOVQ96L33 236 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 TBX15Q96SF7 602 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 RNF5Q99942 180 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 FOXC2Q99958 501 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 C7orf69Q9H7B7 122 aa8.35□□□□□ -1.07
USP3-219ENST00000561326 CACNG5Q9UF02 275 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms