RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 H0YJW9 148 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 NDUFB6O95139 128 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 RAB3DO95716 219 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 CD74P04233 296 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 IFNA6P05013 189 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 IL5P05113 134 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 CTXN2P0C2S0 81 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 OR8U9P0C7N5 309 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 BTCP35070 178 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 MECP2P51608 486 aaKnown RBP7.42□□□□□ -1.22
LDLR-211ENST00000560173 TAS2R46P59540 309 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 RNASE10Q5GAN6 216 aaKnown RBP7.42□□□□□ -1.22
LDLR-211ENST00000560173 C9orf152Q5JTZ5 239 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 GLDNQ6ZMI3 551 aaPredicted RBP7.42□□□□□ -1.22
LDLR-211ENST00000560173 TMEM17Q86X19 198 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 FAM71E2Q8N5Q1 922 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 GVQW1Q8N7I0 195 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 Q8N9W7 124 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 BEST4Q8NFU0 473 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 OR5AN1Q8NGI8 311 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 OR8U1Q8NH10 309 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 C5orf30Q96GV9 206 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 C20orf85Q9H1P6 137 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 OR2D2Q9H210 308 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 LIN7CQ9NUP9 197 aaKnown RBP7.42□□□□□ -1.22
LDLR-211ENST00000560173 SLC2A8Q9NY64 477 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 ANAPC10Q9UM13 185 aa7.42□□□□□ -1.22
LDLR-211ENST00000560173 SNRPGP15A8MWD9 76 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 M0R1X1 148 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 TUSC2O75896 110 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 SNAPC5O75971 98 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 IGHG2P01859 326 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 NAT1P18440 290 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 NFYAP23511 347 aaPredicted RBP7.41□□□□□ -1.22
LDLR-211ENST00000560173 ECI1P42126 302 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 F2RL1P55085 397 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 ARPC4P59998 168 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 RRAS2P62070 204 aaPredicted RBP7.41□□□□□ -1.22
LDLR-211ENST00000560173 MMDQ15546 238 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 PRR31Q5SQ13 230 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 HIST2H2BDQ6DRA6 164 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 ARRDC1Q8N5I2 433 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 C11orf44Q8N8P7 122 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 ZNF383Q8NA42 475 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 DRAXINQ8NBI3 349 aaPredicted RBP7.41□□□□□ -1.22
LDLR-211ENST00000560173 OR4C16Q8NGL9 310 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 SNAPC3Q92966 411 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 RITA1Q96K30 269 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 ALX4Q9H161 411 aaPredicted RBP7.41□□□□□ -1.22
LDLR-211ENST00000560173 MED28Q9H204 178 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 SDHAF2Q9NX18 166 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 GAB2Q9UQC2 676 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 WASHC3Q9Y3C0 194 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 ALG5Q9Y673 324 aa7.41□□□□□ -1.22
LDLR-211ENST00000560173 TRAV6A0A075B6T7 132 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 IGKV1D-13A0A0B4J2D9 117 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 MEIS3P1A6NDR6 274 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 M0QZ24 198 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 NBR2O15453 112 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 FBXO24O75426 580 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 CD3DP04234 171 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 FCER2P06734 321 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 IGKV1-13P0DP09 117 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 CD28P10747 220 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 CNTFRP26992 372 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 MC5RP33032 325 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 EIF2B2P49770 351 aaKnown RBP7.4□□□□□ -1.22
LDLR-211ENST00000560173 CCR6P51684 374 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 LINC00205P59089 165 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 CDK10Q15131 360 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 VAX1Q5SQQ9 334 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 SLC35E3Q7Z769 313 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 NPBQ8NG41 125 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 ASB13Q8WXK3 278 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 RASL11BQ9BPW5 248 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 OR51J1Q9H342 316 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 OR2W1Q9Y3N9 320 aa7.4□□□□□ -1.22
LDLR-211ENST00000560173 RBM7Q9Y580 266 aaKnown RBP7.4□□□□□ -1.22
LDLR-211ENST00000560173 NOTCH3Q9UM47 2321 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 LINC01548A6NM66 108 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 H7C2Y5 167 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 CREBL2O60519 120 aaPredicted RBP7.39□□□□□ -1.23
LDLR-211ENST00000560173 NDUFA3O95167 84 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 APOA2P02652 100 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 IGKV1-16P04430 117 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 OR5H8P0DN80 308 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 LUMP51884 338 aaPredicted RBP7.39□□□□□ -1.23
LDLR-211ENST00000560173 TAS2R31P59538 309 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 UBE2MP61081 183 aaKnown RBP7.39□□□□□ -1.23
LDLR-211ENST00000560173 C5orf64Q2M2E5 130 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 IDO2Q6ZQW0 420 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 PDPNQ86YL7 162 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 TCTE3Q8IZS6 198 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 ZNF645Q8N7E2 425 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 OR5AP2Q8NGF4 316 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 OR51S1Q8NGJ8 323 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 OR5H2Q8NGV7 314 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 OR6F1Q8NGZ6 308 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 GIMAP1Q8WWP7 306 aa7.39□□□□□ -1.23
LDLR-211ENST00000560173 HSPB9Q9BQS6 159 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 429.8 ms