RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 SEBOXQ9HB31 216 aaPredicted RBP10.1□□□□□ -0.79
SHMT2-230ENST00000557427 PRR13Q9NZ81 148 aa10.1□□□□□ -0.79
SHMT2-230ENST00000557427 MBD2Q9UBB5 411 aa10.1□□□□□ -0.79
SHMT2-230ENST00000557427 FAM96BQ9Y3D0 163 aa10.1□□□□□ -0.79
SHMT2-230ENST00000557427 HYDINQ4G0P3 5121 aa10.1□□□□□ -0.79
SHMT2-230ENST00000557427 IGKV1-6A0A0C4DH72 117 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 KANTRA0A1W2PQU2 76 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 RNF222A6NCQ9 220 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 RNASEK-C17orf49H0YIS7 233 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 SIRPB1O00241 398 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 GPR31O00270 319 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 BCL2L11O43521 198 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 HAND1O96004 215 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 HOXB5P09067 269 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 OR5AC1P0C628 307 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 PET100P0DJ07 73 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 PHLDA2Q53GA4 152 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 DHRS7BQ6IAN0 325 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-230ENST00000557427 H1FOOQ8IZA3 346 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-230ENST00000557427 LGI3Q8N145 548 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 OR8H3Q8N146 312 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 ZNF565Q8N9K5 539 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 INO80EQ8NBZ0 244 aaPredicted RBP10.09□□□□□ -0.79
SHMT2-230ENST00000557427 C8orf46Q8TAG6 207 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 PLPPR1Q8TBJ4 325 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 RNF126Q9BV68 326 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 C19orf12Q9NSK7 152 aa10.09□□□□□ -0.79
SHMT2-230ENST00000557427 MBNL3Q9NUK0 354 aaKnown RBP10.09□□□□□ -0.79
SHMT2-230ENST00000557427 MEX3AA1L020 520 aaKnown RBP10.08□□□□□ -0.8
SHMT2-230ENST00000557427 BET1O15155 118 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 MPPED1O15442 326 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 GNRHRP30968 328 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 ERVFRD-1P60508 538 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 RAB14P61106 215 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 RPL31P62899 125 aaKnown RBP10.08□□□□□ -0.8
SHMT2-230ENST00000557427 HMGN3Q15651 99 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 GGNBP1Q5YKI7 109 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 TMEM200BQ69YZ2 307 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 C1orf122Q6ZSJ8 110 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 ZNF561Q8N587 486 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 OR10J5Q8NHC4 309 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 SCARB1Q8WTV0 552 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 GLYATL2Q8WU03 294 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 SLC5A7Q9GZV3 580 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 KIF25Q9UIL4 384 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 OR2W1Q9Y3N9 320 aa10.08□□□□□ -0.8
SHMT2-230ENST00000557427 TRBV23-1A0A0A0MS06 115 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 C3orf85A0A1B0GTC6 90 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 DUXBA0A1W2PPF3 345 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 TMEM30CPA0ZSE6 113 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 MPTX1A8MV57 137 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 H0YIZ8 118 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 M0R1W7 72 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 NPFFO15130 113 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 IGLL1P15814 213 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 RCC1P18754 421 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-230ENST00000557427 NUP62P37198 522 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-230ENST00000557427 KRTAP10-11P60412 298 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 CD69Q07108 199 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 IAH1Q2TAA2 248 aaPredicted RBP10.07□□□□□ -0.8
SHMT2-230ENST00000557427 SECTM1Q8WVN6 248 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 DCUN1D4Q92564 292 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 TNFRSF14Q92956 283 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 KIRREL1Q96J84 757 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 B9D2Q9BPU9 175 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 ZFP57Q9NU63 452 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 TRAPPC2LQ9UL33 140 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 TMED3Q9Y3Q3 217 aa10.07□□□□□ -0.8
SHMT2-230ENST00000557427 LYSTQ99698 3801 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 IGKV1D-13A0A0B4J2D9 117 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 PIGBOS1A0A0B4J2F0 54 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 ANKRD34BA5PLL1 514 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 IGKV1-13P0DP09 117 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 S100GP29377 79 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 AP2S1P53680 142 aaPredicted RBP10.06□□□□□ -0.8
SHMT2-230ENST00000557427 PAX5Q02548 391 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 RAB32Q13637 225 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 ATXN7L3Q14CW9 347 aaPredicted RBP10.06□□□□□ -0.8
SHMT2-230ENST00000557427 SP6Q3SY56 376 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 C5orf24Q7Z6I8 188 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 TBC1D26Q86UD7 250 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 CMTM1Q8IZ96 169 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 PPP1R35Q8TAP8 253 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 ST8SIA2Q92186 375 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 PHYHIPLQ96FC7 376 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 TMEM56Q96MV1 263 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 AQP10Q96PS8 301 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 ARPC5LQ9BPX5 153 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 TMEM222Q9H0R3 208 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 VPREB3Q9UKI3 123 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 TMEM56-RWDD3S4R434 201 aa10.06□□□□□ -0.8
SHMT2-230ENST00000557427 A0A1W2PPH5 198 aa10.05□□□□□ -0.8
SHMT2-230ENST00000557427 ADARB2-AS1A8MUL3 147 aa10.05□□□□□ -0.8
SHMT2-230ENST00000557427 C3orf84H3BNL1 204 aa10.05□□□□□ -0.8
SHMT2-230ENST00000557427 K7N7A8 449 aa10.05□□□□□ -0.8
SHMT2-230ENST00000557427 PSPNO60542 156 aa10.05□□□□□ -0.8
SHMT2-230ENST00000557427 CCL3L1P16619 93 aa10.05□□□□□ -0.8
SHMT2-230ENST00000557427 UCP1P25874 307 aa10.05□□□□□ -0.8
SHMT2-230ENST00000557427 UBE2E1P51965 193 aa10.05□□□□□ -0.8
SHMT2-230ENST00000557427 EDDM3BP56851 147 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms