RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 C9orf106Q8NAJ2 232 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 EDARADDQ8WWZ3 215 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 SPSB4Q96A44 273 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 FAM122AQ96E09 287 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 PARLQ9H300 379 aa10.22□□□□□ -0.77
CCDC88C-211ENST00000556726 IGHV3-21A0A0B4J1V1 117 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 C5orf52A6NGY3 159 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 IGKV1-39P01597 117 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 IGKV1D-39P04432 117 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 ELOBQ15370 118 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 SLC35E3Q7Z769 313 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 WDR86Q86TI4 376 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 OR10A7Q8NGE5 316 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 CCL17Q92583 94 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 TAAR6Q96RI8 345 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 CCL13Q99616 98 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 HSD17B10Q99714 261 aaKnown RBP10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 DDA1Q9BW61 102 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 RALYQ9UKM9 306 aaKnown RBP10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 DMDP11532 3685 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 GYPAP02724 150 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 ASCL4Q6XD76 172 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 BAGE3Q86Y29 109 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 BAGE2Q86Y30 109 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 ITLN1Q8WWA0 313 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 NEIL1Q96FI4 390 aaPredicted RBP10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 NAT8Q9UHE5 227 aa10.21□□□□□ -0.77
CCDC88C-211ENST00000556726 PLXNB1O43157 2135 aa10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 F6UZH7 168 aa10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 GAMTQ14353 236 aa10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 ZNF506Q5JVG8 444 aa10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 SAXO1Q8IYX7 474 aa10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 RPP25LQ8N5L8 163 aaKnown RBP10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 OR4P4Q8NGL7 312 aa10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 IL22RA2Q969J5 263 aa10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 CIB3Q96Q77 187 aaPredicted RBP10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 PKIBQ9C010 78 aa10.21□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST1H2BKO60814 126 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST1H2BJP06899 126 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 OR10J4P0C629 311 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 CD59P13987 128 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST1H2BOP23527 126 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST1H2BBP33778 126 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST1H2BDP58876 126 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST1H2BCP62807 126 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST2H2BEQ16778 126 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 PRR31Q5SQ13 230 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 CDPF1Q6NVV7 123 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 ZNF645Q8N7E2 425 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 OR8G5Q8NG78 346 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 FAM216AQ8WUB2 273 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST1H2BHQ93079 126 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST1H2BNQ99877 126 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HIST1H2BMQ99879 126 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 WIPI2Q9Y4P8 454 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 IGKV3D-15A0A087WSY6 115 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 A0A1W2PNU3 283 aaPredicted RBP10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 LRRC30A6NM36 301 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 NDUFA2O43678 99 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 CYB5R3P00387 301 aaPredicted RBP10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 MYOD1P15172 320 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 GATA2P23769 480 aaPredicted RBP10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 ATP5G3P48201 142 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 SSX7Q7RTT5 188 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 DYNLRB1Q9NP97 96 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 NOTCH3Q9UM47 2321 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 CHD3Q12873 2000 aaKnown RBP10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 CD1BP29016 333 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 RPP30P78346 268 aaKnown RBP10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 ZNF585BQ52M93 769 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 HEPN1Q6WQI6 88 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 OR2T10Q8NGZ9 312 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 ZDHHC11Q9H8X9 412 aa10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 METTL1Q9UBP6 276 aaKnown RBP10.2□□□□□ -0.78
CCDC88C-211ENST00000556726 NCOR2Q9Y618 2525 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 CTXND1A0A1B0GTU2 59 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 DUXBA0A1W2PPF3 345 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 SEC14L6B5MCN3 397 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 PLAUP00749 431 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 COX5BP10606 129 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 TNFSF10P50591 281 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 COLCA1Q6ZS62 124 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 SGK494Q96LW2 274 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 TRAPPC1Q9Y5R8 145 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 IGHV3-72A0A0B4J1Y9 119 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 OR5G3P0C626 314 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 KLF3P57682 345 aaPredicted RBP10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 GNB1P62873 340 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 LRRC75BQ2VPJ9 315 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 ZNF705AQ6ZN79 300 aaPredicted RBP10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 ZNF497Q6ZNH5 498 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 BHLHA15Q7RTS1 189 aaPredicted RBP10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 UHRF2Q96PU4 802 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 GRIFINA4D1Z8 144 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 TNFSF4P23510 183 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 ERVFC1-1P60608 527 aa10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 MRPS11P82912 194 aaKnown RBP10.19□□□□□ -0.78
CCDC88C-211ENST00000556726 SERF2P84101 59 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms