RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 DVL1O14640 695 aa21.65■■□□□ 1.06
CCDC88C-205ENST00000553403 C1orf229Q6ZS94 237 aaPredicted RBP21.65■■□□□ 1.06
CCDC88C-205ENST00000553403 LYG1Q8N1E2 194 aa21.65■■□□□ 1.06
CCDC88C-205ENST00000553403 TMEM217Q8N7C4 229 aa21.65■■□□□ 1.06
CCDC88C-205ENST00000553403 STRAPQ9Y3F4 350 aaKnown RBP21.65■■□□□ 1.06
CCDC88C-205ENST00000553403 H3BP45 60 aa21.64■■□□□ 1.05
CCDC88C-205ENST00000553403 ZG16O60844 167 aa21.64■■□□□ 1.05
CCDC88C-205ENST00000553403 TMEM267Q0VDI3 215 aaPredicted RBP21.64■■□□□ 1.05
CCDC88C-205ENST00000553403 BTNL8Q6UX41 500 aa21.64■■□□□ 1.05
CCDC88C-205ENST00000553403 OR4S2Q8NH73 311 aa21.64■■□□□ 1.05
CCDC88C-205ENST00000553403 AGAP20933 346 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 PJVKQ0ZLH3 352 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 AARDQ4LEZ3 155 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 H1FXQ92522 213 aaKnown RBP21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 RAB39BQ96DA2 213 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 TSNAXQ99598 290 aaKnown RBP21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 CACFD1Q9UGQ2 172 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 TENM4Q6N022 2769 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 ATP6V0CP27449 155 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 GNG10P50151 68 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 ERVK-16P61578 105 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 GNPNAT1Q96EK6 184 aaPredicted RBP21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 CIB3Q96Q77 187 aaPredicted RBP21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 SH3BGRL3Q9H299 93 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 CBLN4Q9NTU7 201 aa21.63■■□□□ 1.05
CCDC88C-205ENST00000553403 NQO2P16083 231 aa21.62■■□□□ 1.05
CCDC88C-205ENST00000553403 F2RL1P55085 397 aa21.62■■□□□ 1.05
CCDC88C-205ENST00000553403 Q6ZRG5 221 aa21.62■■□□□ 1.05
CCDC88C-205ENST00000553403 LYPD6BQ8NI32 183 aa21.62■■□□□ 1.05
CCDC88C-205ENST00000553403 USF3Q68DE3 2245 aa21.62■■□□□ 1.05
CCDC88C-205ENST00000553403 HCFC1P51610 2035 aa21.62■■□□□ 1.05
CCDC88C-205ENST00000553403 TRIM77I1YAP6 450 aa21.61■■□□□ 1.05
CCDC88C-205ENST00000553403 CCL3L1P16619 93 aa21.61■■□□□ 1.05
CCDC88C-205ENST00000553403 COL8A2P25067 703 aa21.61■■□□□ 1.05
CCDC88C-205ENST00000553403 HBG1P69891 147 aa21.61■■□□□ 1.05
CCDC88C-205ENST00000553403 HBG2P69892 147 aa21.61■■□□□ 1.05
CCDC88C-205ENST00000553403 TMEM14EPQ6UXP3 125 aa21.61■■□□□ 1.05
CCDC88C-205ENST00000553403 RAB1BQ9H0U4 201 aa21.61■■□□□ 1.05
CCDC88C-205ENST00000553403 HRH4Q9H3N8 390 aa21.61■■□□□ 1.05
CCDC88C-205ENST00000553403 LY86O95711 162 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 IFNA5P01569 189 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 METTL15P1P0C7V9 234 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 SPANXN5Q5MJ07 72 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 BPIFCQ8NFQ6 507 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 TRBV23-1A0A0A0MS06 115 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 UMAD1C9J7I0 102 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 OR9G9P0C7N8 305 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 C8orf31Q8N9H6 132 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 ZNF383Q8NA42 475 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 DTD1Q8TEA8 209 aa21.6■■□□□ 1.05
CCDC88C-205ENST00000553403 RBMXL2O75526 392 aaKnown RBP21.59■■□□□ 1.05
CCDC88C-205ENST00000553403 IGHV2-70P01814 119 aa21.59■■□□□ 1.05
CCDC88C-205ENST00000553403 DLX6P56179 175 aa21.59■■□□□ 1.05
CCDC88C-205ENST00000553403 TUSC1Q2TAM9 212 aa21.59■■□□□ 1.05
CCDC88C-205ENST00000553403 TMEM155Q4W5P6 130 aa21.59■■□□□ 1.05
CCDC88C-205ENST00000553403 C11orf71Q6IPW1 123 aa21.59■■□□□ 1.05
CCDC88C-205ENST00000553403 HAPLN4Q86UW8 402 aa21.59■■□□□ 1.05
CCDC88C-205ENST00000553403 OR2G3Q8NGZ4 309 aa21.59■■□□□ 1.05
CCDC88C-205ENST00000553403 ITLN2Q8WWU7 325 aaPredicted RBP21.59■■□□□ 1.05
CCDC88C-205ENST00000553403 GNLYP22749 145 aa21.58■■□□□ 1.05
CCDC88C-205ENST00000553403 CAMLGP49069 296 aa21.58■■□□□ 1.05
CCDC88C-205ENST00000553403 ARL16Q0P5N6 197 aa21.58■■□□□ 1.05
CCDC88C-205ENST00000553403 ZNF525Q8N782 197 aa21.58■■□□□ 1.05
CCDC88C-205ENST00000553403 OR52E5Q8NH55 327 aa21.58■■□□□ 1.05
CCDC88C-205ENST00000553403 ZNF596Q8TC21 504 aa21.58■■□□□ 1.05
CCDC88C-205ENST00000553403 NUP50Q9UKX7 468 aa21.58■■□□□ 1.05
CCDC88C-205ENST00000553403 ROS1P08922 2347 aa21.58■■□□□ 1.04
CCDC88C-205ENST00000553403 LYNX1G3V0Z9 82 aa21.57■■□□□ 1.04
CCDC88C-205ENST00000553403 LYNX1P0DP58 116 aa21.57■■□□□ 1.04
CCDC88C-205ENST00000553403 TMEM182Q6ZP80 229 aaPredicted RBP21.57■■□□□ 1.04
CCDC88C-205ENST00000553403 ZNF833PQ6ZTB9 187 aa21.57■■□□□ 1.04
CCDC88C-205ENST00000553403 LINC00311Q8N616 119 aa21.57■■□□□ 1.04
CCDC88C-205ENST00000553403 OR4A16Q8NH70 328 aa21.57■■□□□ 1.04
CCDC88C-205ENST00000553403 QTRT1Q9BXR0 403 aaKnown RBP21.57■■□□□ 1.04
CCDC88C-205ENST00000553403 PARD6GQ9BYG4 376 aaPredicted RBP21.57■■□□□ 1.04
CCDC88C-205ENST00000553403 PRH1P02810 166 aa21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 POU2AF1Q16633 256 aa21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 PDLIM3Q53GG5 364 aaPredicted RBP21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 COMMD1Q8N668 190 aa21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 CEBPZOSA8MTT3 80 aa21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 CRYZL1O95825 349 aa21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 UQCRFS1P47985 274 aa21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 SPCS3P61009 180 aa21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 DHRS7BQ6IAN0 325 aaPredicted RBP21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 NEU4Q8WWR8 484 aaPredicted RBP21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 OR4C12Q96R67 309 aa21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 TMEM140Q9NV12 185 aa21.56■■□□□ 1.04
CCDC88C-205ENST00000553403 A0A087X0M5 115 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 A0A1B0GX30 115 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 GPR37O15354 613 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 SCAF4O95104 1147 aaKnown RBP21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 OR8U8P0C7N1 319 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 CT45A6P0DMU7 189 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 CT45A5P0DMU8 189 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 CT45A7P0DMV0 189 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 ERVFRD-1P60508 538 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 RELBQ01201 579 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 FAM71F2Q6NXP2 309 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 SSX9Q7RTT3 188 aa21.55■■□□□ 1.04
CCDC88C-205ENST00000553403 SCGB1C1Q8TD33 95 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms