RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 H3BN98 237 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 DEGS1O15121 323 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 ARPC1BO15143 372 aaKnown RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 ATP6V0E1O15342 81 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 TXNL1O43396 289 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SYT7O43581 403 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 PRKYO43930 277 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 NOL3O60936 208 aaKnown RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SULT1C4O75897 302 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 HLA-DRB1P01911 266 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 HSPB1P04792 205 aaKnown RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 TFAP2AP05549 437 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 LGALS1P09382 135 aaKnown RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 OR8U9P0C7N5 309 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 OR2T7P0C7T2 308 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 RBMY1A1P0DJD3 496 aaKnown RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 ZNF44P15621 663 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 GZMHP20718 246 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SSTR5P35346 364 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 NUP62P37198 522 aaPredicted RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 REG1BP48304 166 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 GNG10P50151 68 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SNU13P55769 128 aaKnown RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 MTCP1P56278 107 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 CXCR4P61073 352 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 POLR2GP62487 172 aaKnown RBP eCLIP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 MS4A2Q01362 244 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SCN1BQ07699 218 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 RAB40BQ12829 278 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 KLF5Q13887 457 aaPredicted RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 ATXN7L3Q14CW9 347 aaPredicted RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 VWC2Q2TAL6 325 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 CT45A1Q5HYN5 189 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 ELP2Q6IA86 826 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 RAB12Q6IQ22 244 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 PET117Q6UWS5 81 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 ASCL4Q6XD76 172 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SH2D6Q7Z4S9 175 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 CROCCP3Q8IVE0 287 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SGPP2Q8IWX5 399 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SLC35F2Q8IXU6 374 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 RDH10Q8IZV5 341 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 PGAM4Q8N0Y7 254 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 MAPKAPK5-AS1Q8N8E1 139 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 YIPF7Q8N8F6 280 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 ZNF439Q8NDP4 499 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 OR10X1Q8NGY0 326 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 CT45A3Q8NHU0 189 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 CNIH3Q8TBE1 160 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 PLPPR1Q8TBJ4 325 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 MRGPRDQ8TDS7 321 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 TMEM106AQ96A25 262 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SPSB1Q96BD6 273 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 FGGYQ96C11 551 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SPACA5Q96QH8 159 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 OR5B12Q96R08 314 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 OR4C12Q96R67 309 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 MBOAT4Q96T53 435 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 TTTY10Q9BZA0 68 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 BARHL1Q9BZE3 327 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 REEP1Q9H902 201 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 ADGRL4Q9HBW9 690 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 RETNQ9HD89 108 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 TVP23BQ9NYZ1 205 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 SIGLEC8Q9NYZ4 499 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 ZNF107Q9UII5 783 aaPredicted RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 STUB1Q9UNE7 303 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 MRPS28Q9Y2Q9 187 aaKnown RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 FBXO7Q9Y3I1 522 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 CHTOPQ9Y3Y2 248 aaKnown RBP2.66□□□□□ -1.98
LIMA1-206ENST00000550611 NUBP2Q9Y5Y2 271 aa2.66□□□□□ -1.98
LIMA1-206ENST00000550611 TRAV39A0A0B4J263 110 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 TRAV41A0A0B4J266 112 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 LOC107986453A0A1B0GWG9 222 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 A0A1W2PQL4 384 aaPredicted RBP2.65□□□□□ -1.99
LIMA1-206ENST00000550611 ZNF670-ZNF695F2Z2N8 137 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 H0YJX3 145 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 FCN1O00602 326 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 SLC31A2O15432 143 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 LANCL1O43813 399 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 ORC5O43913 435 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 CIDEAO60543 219 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 RPP14O95059 124 aaKnown RBP2.65□□□□□ -1.99
LIMA1-206ENST00000550611 NDUFA3O95167 84 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 BRI3O95415 125 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 CRYZL1O95825 349 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 CST1P01037 141 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 MT-ND4P03905 459 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 ISG15P05161 165 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 GSTT2P0CG29 244 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 GSTT2BP0CG30 244 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 DBTP11182 482 aaKnown RBP2.65□□□□□ -1.99
LIMA1-206ENST00000550611 ANXA8P13928 327 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 PRKACGP22612 351 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 MAPK3P27361 379 aaPredicted RBP2.65□□□□□ -1.99
LIMA1-206ENST00000550611 EPHA2P29317 976 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 BLVRBP30043 206 aaPredicted RBP2.65□□□□□ -1.99
LIMA1-206ENST00000550611 GLP1RP43220 463 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 KCNJ3P48549 501 aa2.65□□□□□ -1.99
LIMA1-206ENST00000550611 CRISP1P54107 249 aa2.65□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms