RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 TMEM235A6NFC5 223 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 TXNDC9O14530 226 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 NIPSNAP2O75323 286 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 DDTP30046 118 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 GABRA2P47869 451 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 XCL1P47992 114 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 LGALS9BQ3B8N2 356 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 AGTRAPQ6RW13 159 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 OR4X2Q8NGF9 303 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 SLC35G5Q96KT7 338 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 DNAJC30Q96LL9 226 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 TXNDC17Q9BRA2 123 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 TTTY13Q9BZ97 58 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 DOCK6Q96HP0 2047 aa1.73□□□□□ -2.13
VPS29-205ENST00000548539 DHX57Q6P158 1386 aaKnown RBP1.72□□□□□ -2.13
VPS29-205ENST00000548539 EVC2Q86UK5 1308 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 ADGRB3O60242 1522 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 SLIT2O94813 1529 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 A0A1W2PQD3 144 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 COX7A2LO14548 114 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 KRT7P08729 469 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 ZNF728P0DKX0 622 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 HINT1P49773 126 aaPredicted RBP1.72□□□□□ -2.13
VPS29-205ENST00000548539 TCL1AP56279 114 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 TBPL1P62380 186 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 HOXC5Q00444 222 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 PRDX4Q13162 271 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 UAP1Q16222 522 aaPredicted RBP1.72□□□□□ -2.13
VPS29-205ENST00000548539 PLPPR5Q32ZL2 321 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 CLVS2Q5SYC1 327 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 FAM78BQ5VT40 261 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 GPHB5Q86YW7 130 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 GID4Q8IVV7 300 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 OR13C8Q8NGS7 320 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 GNPNAT1Q96EK6 184 aaPredicted RBP1.72□□□□□ -2.13
VPS29-205ENST00000548539 CCL13Q99616 98 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 ZNF471Q9BX82 626 aaPredicted RBP1.72□□□□□ -2.13
VPS29-205ENST00000548539 TAAR3PQ9P1P4 343 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 C3orf18Q9UK00 162 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 ANAPC10Q9UM13 185 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 COQ4Q9Y3A0 265 aa1.72□□□□□ -2.13
VPS29-205ENST00000548539 V9GYY5 206 aaPredicted RBP1.72□□□□□ -2.13
VPS29-205ENST00000548539 ZNF638Q14966 1978 aaKnown RBP1.72□□□□□ -2.13
VPS29-205ENST00000548539 MYO16Q9Y6X6 1858 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 A0A087WUU8 490 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 A0A0G2JQZ4 141 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 C9JCJ5 164 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 OVOL1O14753 267 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 TGOLN2O43493 480 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 NDUFB2O95178 105 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 APOMO95445 188 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 BPGMP07738 259 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 CCL1P22362 96 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 PEBP1P30086 187 aaKnown RBP1.71□□□□□ -2.14
VPS29-205ENST00000548539 CCR2P41597 374 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 MAP2K4P45985 399 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 RPL27AP46776 148 aaKnown RBP1.71□□□□□ -2.14
VPS29-205ENST00000548539 AP2S1P53680 142 aaPredicted RBP1.71□□□□□ -2.14
VPS29-205ENST00000548539 RBM11P57052 281 aaKnown RBP1.71□□□□□ -2.14
VPS29-205ENST00000548539 KRTAP12-1P59990 96 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 COQ5Q5HYK3 327 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 UMODL1-AS1Q8N2C9 162 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 CLDND2Q8NHS1 167 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 RNASE11Q8TAA1 199 aaKnown RBP1.71□□□□□ -2.14
VPS29-205ENST00000548539 JOSD2Q8TAC2 188 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 RNF133Q8WVZ7 376 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 MRPS24Q96EL2 167 aaKnown RBP1.71□□□□□ -2.14
VPS29-205ENST00000548539 FKBP14Q9NWM8 211 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 PXMP4Q9Y6I8 212 aa1.71□□□□□ -2.14
VPS29-205ENST00000548539 DSCAML1Q8TD84 2053 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 RFPL4AA6NLU0 287 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 RFPL4AL1F8VTS6 287 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 LY6LH3BQJ8 138 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 H3BRN7 92 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 CALB1P05937 261 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 IFI30P13284 250 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 CCR7P32248 378 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 SLCO1A2P46721 670 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 CD200R1LQ6Q8B3 271 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 Q6ZS52 159 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 LHFPL1Q86WI0 220 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 C10orf67Q8IYJ2 551 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 Q8NDZ9 215 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 OR51D1Q8NGF3 324 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 SMCR5Q8TEV8 140 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 PTH2Q96A98 100 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 DIRAS2Q96HU8 199 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 PARD6GQ9BYG4 376 aaPredicted RBP1.7□□□□□ -2.14
VPS29-205ENST00000548539 TMEM222Q9H0R3 208 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 OR51I1Q9H343 314 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 XPNPEP1Q9NQW7 623 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 TMEM106BQ9NUM4 274 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 NDUFB11Q9NX14 153 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 UBAP1Q9NZ09 502 aa1.7□□□□□ -2.14
VPS29-205ENST00000548539 KLK5Q9Y337 293 aaPredicted RBP1.7□□□□□ -2.14
VPS29-205ENST00000548539 TMEM269A0A1B0GVZ9 245 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 ACOX3O15254 700 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 ISG15P05161 165 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 NAA20P61599 178 aa1.69□□□□□ -2.14
VPS29-205ENST00000548539 DEFB103AP81534 67 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms