RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 OR10A7Q8NGE5 316 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 GNB4Q9HAV0 340 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 PROK2Q9HC23 129 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 NAT8BQ9UHF3 227 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 HIST1H3AP68431 136 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 CCL20P78556 96 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 CA5BP1Q8WTZ4 195 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 CYTL1Q9NRR1 136 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 NUP210Q8TEM1 1887 aaPredicted RBP13.26□□□□□ -0.29
CUX1-211ENST00000546411 PLAUP00749 431 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 CD55P08174 381 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 KRTDAPP60985 99 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 UBE2L3P68036 154 aaKnown RBP13.26□□□□□ -0.29
CUX1-211ENST00000546411 CALYQ9NYX4 217 aa13.26□□□□□ -0.29
CUX1-211ENST00000546411 SLC25A10Q9UBX3 287 aaPredicted RBP13.26□□□□□ -0.29
CUX1-211ENST00000546411 FAM157CP0CG43 387 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 GNG4P50150 75 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 FOXF2Q12947 444 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 LRP11Q86VZ4 500 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 RCC1LQ96I51 464 aaKnown RBP13.25□□□□□ -0.29
CUX1-211ENST00000546411 TECTAO75443 2155 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 LY86O95711 162 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 HPRT1P00492 218 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 MPZP25189 248 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 BPIFB3P59826 476 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 ACACBO00763 2458 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 FCN1O00602 326 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 RAB29O14966 203 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 PMCHP20382 165 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 RSPO1Q2MKA7 263 aaPredicted RBP13.25□□□□□ -0.29
CUX1-211ENST00000546411 TGIF2LYQ8IUE0 185 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 TGIF2LXQ8IUE1 241 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 GINS3Q9BRX5 216 aa13.25□□□□□ -0.29
CUX1-211ENST00000546411 HSPB1P04792 205 aaKnown RBP13.24□□□□□ -0.29
CUX1-211ENST00000546411 C1orf185Q5T7R7 199 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 C16orf82Q7Z2V1 217 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 PXMP4Q9Y6I8 212 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 RAMP3O60896 148 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 CAMPP49913 170 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 TEPPQ6URK8 271 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 IL22RA2Q969J5 263 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 SLC45A2Q9UMX9 530 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 IL18BPO95998 194 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 RPS2P15880 293 aaKnown RBP13.24□□□□□ -0.29
CUX1-211ENST00000546411 CNN1P51911 297 aaKnown RBP13.24□□□□□ -0.29
CUX1-211ENST00000546411 SUMO1P63165 101 aaKnown RBP13.24□□□□□ -0.29
CUX1-211ENST00000546411 HOXA4Q00056 320 aaPredicted RBP13.24□□□□□ -0.29
CUX1-211ENST00000546411 GAMTQ14353 236 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 EIF4E3Q8N5X7 224 aaKnown RBP13.24□□□□□ -0.29
CUX1-211ENST00000546411 SLC24A4Q8NFF2 622 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 FLYWCH2Q96CP2 140 aaKnown RBP13.24□□□□□ -0.29
CUX1-211ENST00000546411 DMRTA2Q96SC8 542 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 USB1Q9BQ65 265 aaKnown RBP13.24□□□□□ -0.29
CUX1-211ENST00000546411 PLSCR2Q9NRY7 297 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 TMEM140Q9NV12 185 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 FAM117AQ9C073 453 aa13.24□□□□□ -0.29
CUX1-211ENST00000546411 ADTRPQ96IZ2 230 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 C18orf12Q96KH6 178 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 OR51B2Q9Y5P1 312 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 TGOLN2O43493 480 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 CD3EP07766 207 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 RPL11P62913 178 aaKnown RBP13.23□□□□□ -0.29
CUX1-211ENST00000546411 ACP7Q6ZNF0 438 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 QTRT1Q9BXR0 403 aaKnown RBP13.23□□□□□ -0.29
CUX1-211ENST00000546411 MANBALQ9NQG1 85 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 CARHSP1Q9Y2V2 147 aaKnown RBP13.23□□□□□ -0.29
CUX1-211ENST00000546411 FGF16O43320 207 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 OR4A8P0C604 315 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 NRN1LQ496H8 165 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 DHRS7BQ6IAN0 325 aaPredicted RBP13.23□□□□□ -0.29
CUX1-211ENST00000546411 OR10G8Q8NGN5 311 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 OR1B1Q8NGR6 318 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 TXN2Q99757 166 aa13.23□□□□□ -0.29
CUX1-211ENST00000546411 TRBV6-7A0A0A0MS04 114 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 SLC25A5P05141 298 aaKnown RBP13.22□□□□□ -0.29
CUX1-211ENST00000546411 LINC00205P59089 165 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 SIGLECL1Q8N7X8 197 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 KDF1Q8NAX2 398 aaPredicted RBP13.22□□□□□ -0.29
CUX1-211ENST00000546411 SGMS2Q8NHU3 365 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 GPR61Q9BZJ8 451 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 A0A0C4DFX4 3053 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 PPIAL4EA0A075B759 164 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 PPIAL4DF5H284 164 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 PPIAL4FP0DN26 164 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 PRB3Q04118 309 aaPredicted RBP13.22□□□□□ -0.29
CUX1-211ENST00000546411 HCP5Q6MZN7 132 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 PCGF1Q9BSM1 259 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 MRPS18CQ9Y3D5 142 aaKnown RBP13.22□□□□□ -0.29
CUX1-211ENST00000546411 PPIAL4AQ9Y536 164 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 SEC14L6B5MCN3 397 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 PTBP3O95758 552 aaKnown RBP13.22□□□□□ -0.29
CUX1-211ENST00000546411 GNB2P62879 340 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 RNFT1Q5M7Z0 435 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 MRPL54Q6P161 138 aaKnown RBP13.22□□□□□ -0.29
CUX1-211ENST00000546411 FAM216BQ8N7L0 139 aa13.22□□□□□ -0.29
CUX1-211ENST00000546411 IGHV2OR16-5A0A0B4J2B6 119 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 DBX1A6NMT0 343 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 PSPNO60542 156 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 PGA5P0DJD9 388 aa13.21□□□□□ -0.29
CUX1-211ENST00000546411 LINC00469Q8N7U9 141 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms