RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 SELENOKQ9Y6D0 94 aa13.35□□□□□ -0.27
CLSTN3-214ENST00000542663 PPP5D1E7EU14 171 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 SHOXO15266 292 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 BPNT1O95861 308 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 SRMP19623 302 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 ATP5G2Q06055 141 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 TNXAQ16473 311 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 PRSS8Q16651 343 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 ACSM3Q53FZ2 586 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 RBM48Q5RL73 367 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 IDO2Q6ZQW0 420 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 PQLC1Q8N2U9 271 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 RPP25LQ8N5L8 163 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 PHYHIPQ92561 330 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 OR2D2Q9H210 308 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 HSF4Q9ULV5 492 aa13.34□□□□□ -0.27
CLSTN3-214ENST00000542663 CXorf65A6NEN9 183 aa13.33□□□□□ -0.28
CLSTN3-214ENST00000542663 HLA-AP01891 365 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-214ENST00000542663 CD3GP09693 182 aa13.33□□□□□ -0.28
CLSTN3-214ENST00000542663 LAIR2Q6ISS4 152 aa13.33□□□□□ -0.28
CLSTN3-214ENST00000542663 TEX45Q8NA69 505 aa13.33□□□□□ -0.28
CLSTN3-214ENST00000542663 CACNG8Q8WXS5 425 aa13.33□□□□□ -0.28
CLSTN3-214ENST00000542663 KCTD12Q96CX2 325 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-214ENST00000542663 S100A14Q9HCY8 104 aa13.33□□□□□ -0.28
CLSTN3-214ENST00000542663 TECRQ9NZ01 308 aaKnown RBP13.33□□□□□ -0.28
CLSTN3-214ENST00000542663 NUPR2A6NF83 97 aa13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 TRDCB7Z8K6 153 aa13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 UBE2KP61086 200 aa13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 TTC23Q5W5X9 447 aa13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 TMEM61Q8N0U2 210 aa13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 NANOGP1Q8N7R0 232 aa13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 DDB2Q92466 427 aa13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 ARHGAP5-AS1Q96IT6 56 aa13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 CMSS1Q9BQ75 279 aaKnown RBP13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 GGTLC1Q9BX51 225 aa13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 PECRQ9BY49 303 aa13.32□□□□□ -0.28
CLSTN3-214ENST00000542663 A0A0J9YWU9 116 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 LGALS9O00182 355 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 MYL12BO14950 172 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 MPPED1O15442 326 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 TUSC2O75896 110 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 TAGLNQ01995 201 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 P2RY14Q15391 338 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 IGSF11Q5DX21 431 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 SLC16A13Q7RTY0 426 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 NECAP1Q8NC96 275 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 OR6M1Q8NGM8 313 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 OR4A4PQ8NGN8 299 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 ACOT12Q8WYK0 555 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 GFI1Q99684 422 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 URM1Q9BTM9 101 aaKnown RBP13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 ZNF430Q9H8G1 570 aaPredicted RBP13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 HECTD4Q9Y4D8 3996 aa13.31□□□□□ -0.28
CLSTN3-214ENST00000542663 OR2J3O76001 311 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 OR2C1O95371 312 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 CBLN1P23435 193 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 CBX3Q13185 183 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 RTL8BQ17RB0 113 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 C15orf32Q32M92 178 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 VMA21Q3ZAQ7 101 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 PLAC9Q5JTB6 97 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 C10orf55Q5SWW7 151 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 CEMP1Q6PRD7 247 aaPredicted RBP13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 CEACAM19Q7Z692 300 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 TTC9CQ8N5M4 171 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 SETD9Q8NE22 299 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 CYGBQ8WWM9 190 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 CABLES2Q9BTV7 478 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 MLXQ9UH92 298 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 PSORS1C1Q9UIG5 152 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 VPS13DQ5THJ4 4388 aa13.3□□□□□ -0.28
CLSTN3-214ENST00000542663 LOC102724200A0A096LPH7 203 aaPredicted RBP13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 TRBV6-7A0A0A0MS04 114 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 LINC00473A8K010 186 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 BET1O15155 118 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 GGCTO75223 188 aaKnown RBP13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 CRYZL1O95825 349 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 RRASP10301 218 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 SERPINB10P48595 397 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 TNFRSF9Q07011 255 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 C19orf35Q6ZS72 473 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 AHSA2Q719I0 299 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 WFDC3Q8IUB2 231 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 MS4A15Q8N5U1 240 aa13.29□□□□□ -0.28
CLSTN3-214ENST00000542663 TMEM213A2RRL7 107 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 FABP7O15540 132 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 UCHL1P09936 223 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 GSTT2P0CG29 244 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 GSTT2BP0CG30 244 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 DUTP33316 252 aaKnown RBP13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 HSD17B12Q53GQ0 312 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 LYG2Q86SG7 212 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 GPHB5Q86YW7 130 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 OR52B4Q8NGK2 314 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 CCDC140Q96MF4 163 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 SPIN2AQ99865 258 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 SPIN2BQ9BPZ2 258 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 KCNK7Q9Y2U2 307 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 KIAA1109Q2LD37 5005 aa13.28□□□□□ -0.28
CLSTN3-214ENST00000542663 SLC17A2O00624 439 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms